HAU0030, HAU0030 (genetic_marker) Gossypium barbadense

Marker Overview
NameHAU0030
AliasHAU030
Genbank IDEE593197
TypeSSR
SpeciesGossypium barbadense
Germplasm3-79
Source TypeEST
Repeat Motif(AG)5
Primer 1HAU0030_F: CGAAGACAAAGAAACACAGAGC
Primer 2HAU0030_R: AGATCGCAAAAATGAAGAGC
Product Length165
Publication[view all]
ContactZhang, Xian-Long
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Xian-Long
Description:Genomics breeding
First name:Xian-Long
Last name:Zhang
Title:Professor
Institution:College of Plant Science and Technology, Huazhong Agricultural University
Address:#1 Shizishan, Wuhan, Hubei 430070
Country:China
Email:xlzhang@mail.hzau.edu.cn
Phone:+86 27 87280510
Fax:+86 27 87280016
Last update:12-Jun-2009
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankEE593197
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D13chromosomeD13:49883477..49883641 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
A13chromosomeA13:87654323..87654487 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018227.1chromosomeCM018227.1:45955774..45955938 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
CM018214.1chromosomeCM018214.1:91792928..91793084 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_13chromosomeD5_13:44725264..44725428 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1
KI_13chromosomeKI_13:33698073..33698236 +Gossypioides kirkii genome ISU_v3
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:105831961..105832125 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
D10_13chromosomeD10_13:46870829..46870993 +Gossypium turneri (D10) genome NSF_v1_a2
CM016626.1chromosomeCM016626.1:134383546..134383710 +Gossypium australe (G2) genome CRI_v1.1
Dt_chr13chromosomeDt_chr13:18436385..18436549 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D13chromosomeD13:45672624..45672788 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
A13chromosomeA13:64217411..64217575 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D13chromosomeGhir_D13:48931289..48931453 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_A13chromosomeGhir_A13:91160960..91161124 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D13chromosomeD13:50136056..50136220 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A13chromosomeA13:94103637..94103801 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D13chromosomeD13:49096401..49096565 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A13chromosomeA13:92139424..92139588 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D13chromosomeD13:46029489..46029653 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
A13chromosomeA13:90926042..90926206 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
At13chromosomeAt13:69489408..69489564 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold3990supercontigscaffold3990:287522..287678 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_D13chromosomeGbar_D13:45681052..45681216 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_A13chromosomeGbar_A13:92824866..92825022 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D13chromosomeD13:47020053..47020217 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
A13chromosomeA13:96040917..96041073 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017635.1chromosomeCM017635.1:46849858..46850022 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017622.1chromosomeCM017622.1:93509997..93510161 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017661.1chromosomeCM017661.1:49990555..49990719 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017648.1chromosomeCM017648.1:98501643..98501807 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017713.1chromosomeCM017713.1:46997318..46997482 +Gossypium darwinii (AD5) genome HGS_v1.1
CM017700.1chromosomeCM017700.1:93941557..93941721 +Gossypium darwinii (AD5) genome HGS_v1.1
D13chromosomeD13:50129865..50130029 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
A13chromosomeA13:94543804..94543968 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr13chromosomeChr13:99471909..99472073 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr13chromosomeChr13:103901115..103901279 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Chr13chromosomeChr13:44729302..44729466 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
B_13chromosomeB_13:18978747..18978911 -Gossypium anomalum (B1) genome NSF_v1
Chr13chromosomeChr13:46207731..46207895 +Gossypium thurberi (D1-5) genome CRI_v1
chr13chromosomechr13:33527819..33527983 +Gossypium armourianum (D2-1) genome ISU_v1
Chr13chromosomeChr13:48519452..48519620 +Gossypium davidsonii (D3d-8) genome CRI_v1
Chr13chromosomeChr13:31112806..31112970 +Gossypium aridum (D4) genome ISU_v1
Chr13chromosomeChr13:24211520..24211684 +Gossypium gossypioides (D6) genome ISU_v1
Chr13chromosomeChr13:30352178..30352342 +Gossypium lobatum (D7) genome ISU_v1
E13chromosomeE13:94081724..94081888 +Gossypium stocksii (E1) genome NSF_v1
F13chromosomeF13:80259830..80259994 +Gossypium longicalyx (F1) genome NSF_v1
Chr13chromosomeChr13:26854459..26854623 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Germplasm
Stock NameType
3-79accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2006)AD_ch01_At.01N/A32.9HAU030aView
2Yumian-1 x T586, RIL (2006)AD_ch08_At.08N/A0HAU030bView
3Yumian-1 x T586, RIL (2009)AD_ch01_At.01N/A41.3HAU030/1200yView
4Yumian-1 x T586, RIL (2009)AD_ch08_At.08N/A35.6HAU030/500tView
5Yumian-1 x T586, RIL (2015)AD_ch08_At.08N/A59.9HAU0030aView
6Yumian-1 x T586, RIL (2015)AD_ch01_At.01N/A52HAU0030bView
Sequence
>HAU0030 ID=HAU0030; Name=HAU0030; organism=Gossypium barbadense; type=genetic_marker; length=165bp
CGAAGACAAAGAAACACAGAGCAGAGAGAGAGACTAAGGGTGAAAATGGC
CTGGTGTAGTTTAAGGTCTATTCACGTTCCAACCGTCGATGTCGGATTAC
TACGCACTCGCTCCCCGTTAGCCGCTGTCGGTGGAGTCGTTGCCGGCTCT
TCATTTTTGCGATCT