Gh697, Gh697 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh697
Genbank IDDQ908626
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908626
Source Typegenomic
Repeat MotifCA(8)
Primer 1Gh697_F: TCCCTGAGCTCATATCTAACTTCC
Primer 2Gh697_R: GACTTACTAAGCTATTCAAGCTTCC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908626
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A09chromosomeA09:33702834..33702929 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018210.1chromosomeCM018210.1:33773714..33773807 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:38674555..38674650 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold3087.1supercontigscaffold3087.1:18406..18501 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A09chromosomeA09:31651794..31651889 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A09chromosomeGhir_A09:36068076..36068171 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A04chromosomeGhir_A04:50511323..50511406 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D12chromosomeGhir_D12:33888489..33888569 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:96270924..96271007 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:49453944..49454024 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:51422661..51422743 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:51287602..51287685 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A09chromosomeA09:38187955..38188050 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:37515763..37515858 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:34944524..34944619 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At10chromosomeAt10:37293824..37293907 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At09chromosomeAt09:32253693..32253786 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At06chromosomeAt06:18585339..18585422 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At03chromosomeAt03:44973822..44973905 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold38844supercontigscaffold38844:3279..3360 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold22063supercontigscaffold22063:19879..19961 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold15075supercontigscaffold15075:9062..9155 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold14135supercontigscaffold14135:48688..48771 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12157supercontigscaffold12157:34550..34631 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11273supercontigscaffold11273:134336..134419 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11051supercontigscaffold11051:277..359 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold542supercontigscaffold542:345978..346061 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A13chromosomeGbar_A13:97935252..97935335 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:49207558..49207640 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:34595440..34595533 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:44800033..44800116 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:26575110..26575193 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:69418047..69418128 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:48709313..48709395 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A09chromosomeA09:35403749..35403842 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017618.1chromosomeCM017618.1:34615171..34615264 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017696.1chromosomeCM017696.1:35246394..35246487 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A09chromosomeA09:38413261..38413356 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:36977741..36977832 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:39175758..39175853 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908626DQ908626Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch13_At.13N/A157.32Gh697View
2TM-1 x 3-79, RIL (2012)AD_ch09_At.09N/A111.12Gh697View
3DH962 X Ji Mian 5, F2 (2015)AD_ch09_At.09N/A41.48Gh697View
4DH962 X Ji Mian 5, F2 (2015)AD_ch09_At.09N/A41.48Gh697View
5TM-1 x 3-79, RIL (2014)AD_ch09_At.09N/A30.1Gh697View
6DH962 x Ji Mian 5, RIL (2015)AD_ch09_At.09N/A5.5Gh697View
7TM-1 x 3-79, RIL (2012.v3)AD_ch09_At.09N/A30.12GH697View
Sequence
>Gh697 ID=Gh697; Name=Gh697; organism=Gossypium hirsutum; type=genetic_marker; length=94bp
TCCCTGAGCTCATATCTAACTTCCAAAATCTATAAAAACAAAGAACATAC
ACACACACACACACAGAGAGGAAGCTTGAATAGCTTAGTAAGTC