Gh565, Gh565 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh565
Genbank IDDQ908502
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908502
Source Typegenomic
Repeat MotifAG(15)
Primer 1Gh565_F: AAAGACTCGGGTACCACCTAATC
Primer 2Gh565_R: GTCCTTCTCATTTATCTGAATTCACC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908502
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:62528403..62528515 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:60977590..60977742 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:54878631..54878735 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr9chromosomeDt_chr9:51009195..51009309 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:59654048..59654160 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:61374034..61374146 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:115761709..115761813 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:62854495..62854607 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:62805122..62805232 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:59578528..59578640 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt01chromosomeDt01:61020594..61020736 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At01chromosomeAt01:81732631..81732735 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1254supercontigscaffold1254:88716..88820 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11279supercontigscaffold11279:204465..204607 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D01chromosomeGbar_D01:61226420..61226562 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:113756042..113756146 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
CM017623.1chromosomeCM017623.1:62182763..62182887 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:63666810..63666964 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:61641478..61641648 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:63274168..63274280 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:50685172..50685276 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:59610173..59610322 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:45821199..45821702 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr02chromosomeChr02:44255781..44255891 -Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:42711805..42711913 -Gossypium lobatum (D7) genome ISU_v1n/a
Chr01chromosomeChr01:1963214..1963329 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908502DQ908502Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch15_Dt.01N/A104.69Gh565View
2Emian-22 x 3-79, BC1 (2011)AD_ch15_Dt.01N/A178.95Gh565View
3Yumian-1 x T586, RIL (2015)AD_ch15_Dt.01N/A110.9Gh565View
4TM-1 x 3-79, RIL (2014)AD_ch15_Dt.01N/A15.2Gh565View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch15_Dt.01N/A34.1Gh565View
6Emian-22 x 3-79, BC1 (2012)AD_ch15_Dt.01N/A181.2Gh565View
7TM-1 x 3-79, RIL (2012.v3)AD_ch15_Dt.01N/A15.21GH565View
Sequence
>Gh565 ID=Gh565; Name=Gh565; organism=Gossypium hirsutum; type=genetic_marker; length=115bp
AAAGACTCGGGTACCACCTAATCTTTTTAATAGAAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGGGAGCATTAATTGAGGAAGTTAATTGGTGAATTCAG
ATAAATGAGAAGGAC