Gh482, Gh482 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh482
Genbank IDDQ908421
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908421
Source Typegenomic
Repeat MotifTCT(13)
Primer 1Gh482_F: CACACCGTTTCCAAGTAAGATTCG
Primer 2Gh482_R: CTTAGTTGAGGTCAACATATAAAAGCAG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908421
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:57139541..57139658 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:54581080..54581197 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:13983927..13984035 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_11chromosomeD10_11:53533738..53533840 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:119685143..119685255 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold269.1supercontigscaffold269.1:1156886..1157003 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:52229515..52229632 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:57122614..57122731 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:105761758..105761845 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:56525583..56525700 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:57071640..57071754 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:54374421..54374538 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt11chromosomeDt11:56006368..56006485 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7346supercontigscaffold7346:154401..154518 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7001supercontigscaffold7001:786941..787028 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:54307897..54308014 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:94952451..94952538 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:57180599..57180707 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:56473110..56473239 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:57858234..57858336 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:54183753..54183879 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:56921616..56921733 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:12285635..12285743 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr07chromosomeChr07:54292120..54292238 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:38782927..38783038 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:36148889..36148991 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:54830199..54830307 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:35027355..35027466 +Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908421DQ908421Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch21_Dt.11N/A16.7Gh482View
2Yumian-1 x T586, RIL (2015)AD_ch21_Dt.11N/A133.8Gh482View
3Yumian-1 x 7235, RIL (2015)AD_ch21_Dt.11N/A43.1Gh482View
40-153 x sGK9708, RIL (2016)AD_ch21_Dt.11N/A65.1Gh482View
5LMY28 x XLZ24, RIL (2018)AD_ch21_Dt.11N/A54.79Gh482View
Sequence
>Gh482 ID=Gh482; Name=Gh482; organism=Gossypium hirsutum; type=genetic_marker; length=118bp
CACACCGTTTCCAAGTAAGATTCGTTAATATTTCTTCTTCTTCTTCTTCT
TCTTCTTCCTCTTCTTCTTCTTCTTTTCATTTTCTTAAATCTGCTTTTAT
ATGTTGACCTCAACTAAG