Gh466, Gh466 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh466
Genbank IDDQ908405
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908405
Source Typegenomic
Repeat MotifAGA(31)
Primer 1Gh466_F: AATCTGCATGTGCCAATACACTGG
Primer 2Gh466_R: CATCACTCCATGTTACAGTTGAGG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908405
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:12083042..12083191 +
D5_01chromosomeD5_01:11670130..11670316 +
Dt_chr2chromosomeDt_chr2:43333020..43333142 -
D01chromosomeD01:11322275..11322430 +
Ghir_D01chromosomeGhir_D01:12643853..12643999 +
D01chromosomeD01:12383766..12383915 +
D01chromosomeD01:12174601..12174744 +
D01chromosomeD01:12534704..12534853 +
D01chromosomeD01:12853424..12853573 +
Chr01chromosomeChr01:11551352..11551513 +
Chr02chromosomeGh466:1..640 .
Chr02:13520382..13521040 +
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908405DQ908405Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch15_Dt.01N/A51.26Gh466View
2Emian-22 x 3-79, BC1 (2011)AD_ch15_Dt.01N/A84.34Gh466View
3Yumian-1 x 7235, RIL (2015)AD_ch15_Dt.01N/A70.8Gh466View
4TM-1 x 3-79, RIL (2014)AD_ch15_Dt.01N/A68.6Gh466View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch01_At.01N/A48.3Gh466View
6CCRI-35 x Yumian-1, RIL (2017)AD_ch15_Dt.01N/A45.95Gh466View
7TM-1 x 3-79, RIL (2012.v3)AD_ch15_Dt.01N/A68.63GH466View
8TM-1 x Hai-7124, BC1 (2012)AD_ch15_Dt.01N/A71.7Gh466-90View
Sequence
>Gh466 ID=Gh466; Name=Gh466; organism=Gossypium hirsutum; type=genetic_marker; length=151bp
AATCTGCATGTGCCAATACACTGGAAGAAGAATAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
ATAAGAAGAAGAAGAAGAAGAAGAAGTCCTCAACTGTAACATGGAGTGAT
G