Gh422, Gh422 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh422
Genbank IDDQ908361
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908361
Source Typegenomic
Repeat MotifAAG(8)
Primer 1Gh422_F: ACTGAAAAGAGAGAATACGTATGGAG
Primer 2Gh422_R: GTGTTAGGTTTCGAGCTAGCTAC
PolymorphismP_ Gh422
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908361
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A05chromosomeA05:45840817..45840932 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018206.1chromosomeCM018206.1:43135207..43135331 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:45025406..45025524 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold1026_A05supercontigscaffold1026_A05:39793..39908 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Scaffold1372supercontigScaffold1372:37930..38042 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:43011850..43011965 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:44537202..44537317 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:43626377..43626492 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At05chromosomeAt05:40101529..40101653 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1277supercontigscaffold1277:279114..279238 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A05chromosomeGbar_A05:41819270..41819394 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:43359164..43359288 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:43515246..43515379 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:45014278..45014396 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:43448113..43448230 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:44997826..44997941 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:46014753..46014872 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:46359484..46359603 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908361DQ908361Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch05_At.05N/A186.98Gh422View
2TM-1 x 3-79, RIL (2012)AD_ch05_At.05N/A127.96Gh422View
3Yumian-1 x 7235, RIL (2015)AD_ch01_At.01N/A78.1Gh422View
4TM-1 x 3-79, RIL (2014)AD_ch05_At.05N/A72.4Gh422View
5Emian-22 x 3-79, BC1 (2015)AD_ch05_At.05N/A177.7Gh422View
6CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch01_At.01N/A127.9Gh422View
7CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch05_At.05N/A178.3Gh422View
8TM-1 x 3-79, RIL (2012.v3)AD_ch05_At.05N/A72.43GH422View
9TM-1 x Hai-7124, BC1 (2012)AD_ch05_At.05N/A69.5Gh422-125View
Sequence
>Gh422 ID=Gh422; Name=Gh422; organism=Gossypium hirsutum; type=genetic_marker; length=116bp
ACTGAAAAGAGAGAATACGTATGGAGTGAATAAGAAGAAGAAGAAGAAGA
AGAAGGAAAAAAAAAGTTGATGGGTAGGAGAAAAAGGTGGGCGGTAGCTA
GCTCGAAACCTAACAC