Gh310, Gh310 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh310
Genbank IDDQ908250
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908250
Source Typegenomic
Repeat MotifCT(10)
Primer 1Gh310_F: CGGCGTTTCTTGGCGTTTTCTG
Primer 2Gh310_R: GCTCATCTATGGTGTTCACATTTCC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908250
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:47438882..47439172 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A09chromosomeA09:75905402..75905526 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:45106662..45106976 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018210.1chromosomeCM018210.1:71098789..71098923 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:78555521..78555642 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_09chromosomeD10_09:5204774..5205052 +Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold377.1supercontigscaffold377.1:735166..735290 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr6chromosomeDt_chr6:5592324..5592616 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:45238734..45239026 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A09chromosomeA09:70171922..70172046 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:47233275..47233564 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:75599902..75600026 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A09chromosomeA09:77042298..77042422 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:46968899..46969192 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:77127480..77127604 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:45067522..45067838 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A09chromosomeA09:74004755..74004879 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold2786supercontigscaffold2786:54474..54784 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold23413supercontigscaffold23413:32098..32232 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A09chromosomeGbar_A09:71715799..71715933 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A09chromosomeA09:73155105..73155239 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017618.1chromosomeCM017618.1:73098842..73098982 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:47513362..47513648 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017644.1chromosomeCM017644.1:76063453..76063572 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017696.1chromosomeCM017696.1:73252358..73252490 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:48713404..48713696 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A09chromosomeA09:78910803..78910927 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:78012890..78013045 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:80883377..80883498 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_09chromosomeB_09:64559854..64560133 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:45363670..45363951 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:37496114..37496391 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_06chromosomeChr_06:31462588..31462866 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:46574371..46574677 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:32202615..32203568 -Gossypium lobatum (D7) genome ISU_v1n/a
E09chromosomeE09:7114978..7115098 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr09chromosomeChr09:125201990..125202268 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908250DQ908250Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch24_Dt.08N/A162.37Gh310View
2(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch09_At.09N/A52.5Gh310View
3Yumian-1 x 7235, RIL (2015)AD_ch09_At.09N/A111Gh310View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch09_At.09N/A139.1Gh310View
5CCRI-35 x Yumian-1, RIL (2015)AD_ch09_At.09N/A69.2Gh310View
6TM-1 x 3-79, RIL (2012)AD_ch09_At.09N/A68.14GH310bView
7TM-1 x 3-79, RIL (2014)AD_ch09_At.09N/A74.9GH310bView
8CCRI-35 x Yumian-1, RIL (2017)AD_ch09_At.09N/A109.59Gh310View
9TM-1 x 3-79, RIL (2012.v3)AD_ch09_At.09N/A74.88GH310bView
Sequence
>Gh310 ID=Gh310; Name=Gh310; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
CGGCGTTTCTTGGCGTTTTCTGCTCTCTCTCTCTCTCTCTCTCCCTAATT
TATTCGGGTTTTGTTTTGTTTTGTTTGATTTCGGGTTATTTCTTATTTTG
GGAAATGTGAACACCATAGATGAGC