Gh308, Gh308 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh308
Genbank IDDQ908248
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908248
Source Typegenomic
Repeat MotifTG(11)
Primer 1Gh308_F: GAACTTGTGGCTTGGTGAATTGTAG
Primer 2Gh308_R: ACGTATCACATACTCATTGCATAGC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908248
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A07chromosomeA07:17362927..17363070 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018208.1chromosomeCM018208.1:17221586..17221731 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:15913901..15914040 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr9chromosomeAt_chr9:77385507..77385650 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A07chromosomeA07:16548272..16548415 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A07chromosomeGhir_A07:17633431..17633574 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A07chromosomeA07:16889811..16889954 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:17659848..17659991 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:17635019..17635162 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold15987supercontigscaffold15987:41819..41964 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A07chromosomeGbar_A07:17203971..17204116 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A07chromosomeA07:17216480..17216625 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017616.1chromosomeCM017616.1:17153816..17153967 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017642.1chromosomeCM017642.1:17158231..17158380 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017694.1chromosomeCM017694.1:17490658..17490801 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A07chromosomeA07:17804809..17804952 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:18369452..18369611 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:18616924..18617063 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_07chromosomeB_07:17788002..17788177 +Gossypium anomalum (B1) genome NSF_v1n/a
F07chromosomeF07:15996226..15996371 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeChr07:30284504..30284666 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908248DQ908248Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x 7235, RIL (2015)AD_ch07_At.07N/A72Gh308View
2GX1135 x GX100-2, RIL (2016)AD_ch07_At.07N/A87.8Gh308View
3CCRI-35 x Yumian-1, RIL (2015)AD_ch07_At.07N/A82.7Gh308View
4CCRI-35 x Yumian-1, RIL (2017)AD_ch07_At.07N/A45.04Gh308View
Sequence
>Gh308 ID=Gh308; Name=Gh308; organism=Gossypium hirsutum; type=genetic_marker; length=144bp
GAACTTGTGGCTTGGTGAATTGTAGAACCATTGTGTGTGTGTGTGTGTGT
GTGATATGTTTGTAACATATTGAAAAAGTATGAAATAATGATAAATAAAA
ATGAAAGTTTCATGAAAATGCTATGCAATGAGTATGTGATACGT