Gh270, Gh270 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh270
Genbank IDDQ908210
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908210
Source Typegenomic
Repeat MotifCA(8)
Primer 1Gh270_F: CAACGACGAGTTTCCTCTTCCAC
Primer 2Gh270_R: CGGTATAGAGATGAAGTTCATTAAGG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908210
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A12chromosomeA12:94168923..94169030 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018213.1chromosomeCM018213.1:91063597..91063702 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:8973630..8973739 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr8chromosomeDt_chr8:50888886..50888993 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A12chromosomeA12:79639320..79639427 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A12chromosomeGhir_A12:98834700..98834807 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A12chromosomeA12:99207167..99207274 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:96992618..96992725 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:93912500..93912607 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold2367supercontigscaffold2367:116447..116552 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A12chromosomeGbar_A12:93791495..93791600 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A12chromosomeA12:93068454..93068559 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:94290658..94290765 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017647.1chromosomeCM017647.1:98513494..98513600 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017699.1chromosomeCM017699.1:93396129..93396235 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A12chromosomeA12:100520162..100520269 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:101240813..101240921 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:108354568..108354677 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908210DQ908210Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch12_At.12N/A27.3Gh270View
2Yumian-1 x T586, RIL (2015)AD_ch12_At.12N/A73.8Gh270View
3CCRI-35 x Yumian-1, RIL (2015)AD_ch12_At.12N/A64.8Gh270View
4CCRI-35 x Yumian-1, RIL (2017)AD_ch12_At.12N/A100.93Gh270View
Sequence
>Gh270 ID=Gh270; Name=Gh270; organism=Gossypium hirsutum; type=genetic_marker; length=107bp
CAACGACGAGTTTCCTCTTCCACTTCACACACACACACACAAAAAAAAAA
GATAGCCGCATTCCGTTTTCAAATTTAATACCCTTAATGAACTTCATCTC
TATACCG