Gh211, Gh211 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh211
Genbank IDDQ908153
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908153
Source Typegenomic
Repeat MotifGAA(24)
Primer 1Gh211_F: GATTGATAAAGATAGGGTTGTGTCAC
Primer 2Gh211_R: CATTATGTGCCTTCAAATTCCTGGC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908153
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:32703149..32703700 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:39180524..39180706 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:31089237..31089787 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:39385914..39386063 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr9chromosomeAt_chr9:30496028..30496213 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:31860703..31861254 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:36106580..36106756 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:32000344..32000895 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:38114265..38114447 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:37680327..37680509 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:39057586..39057804 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:38123248..38123439 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold19126supercontigscaffold19126:42179..42286 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12842supercontigscaffold12842:583..696 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:31640758..31641308 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:36767170..36767277 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
CM017627.1chromosomeCM017627.1:31509250..31509802 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:31994034..31994584 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D05chromosomeD05:32554385..32554936 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:39522433..39522615 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:40696999..40697178 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:40434102..40434251 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:29768708..29769259 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr_09chromosomeChr_09:25606040..25606317 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908153DQ908153Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch05_At.05N/A184.74Gh211View
2TM-1 x 3-79, RIL (2012)AD_ch05_At.05N/A117.42Gh211View
3Yumian-1 x T586, RIL (2015)AD_ch05_At.05N/A90.7Gh211View
4TM-1 x 3-79, RIL (2014)AD_ch05_At.05N/A79.6Gh211View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch05_At.05N/A168.9Gh211View
6TM-1 x 3-79, RIL (2012.v3)AD_ch05_At.05N/A79.59GH211View
7TM-1 x Hai-7124, BC1 (2012)AD_ch05_At.05N/A79.5Gh211-115View
Sequence
>Gh211 ID=Gh211; Name=Gh211; organism=Gossypium hirsutum; type=genetic_marker; length=183bp
GATTGATAAAGATAGGGTTGTGTCACTAAAAGTAAAGAGCAACTACACTA
CTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAGAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGAGGT
TACCAAATGCCAGGAATTTGAAGGCACATAATG