Gh183, Gh183 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh183
Genbank IDDQ908125
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908125
Source Typegenomic
Repeat MotifGA(20)
Primer 1Gh183_F: AGCCAGAACCTGATTGAATCA
Primer 2Gh183_R: ACCGCTATATTTCTTTAAGCACC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908125
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:25095087..25095285 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:23828374..23828572 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:70194657..70194857 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:38818202..38818382 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:88798897..88799107 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:40927626..40927809 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:53502698..53502906 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:15040743..15040947 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr11chromosomeDt_chr11:22753120..22753320 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:23888839..23889039 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:23951954..23952153 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:23279354..23279554 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:24112937..24113137 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:24087428..24087630 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:23653919..23654113 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:24022800..24022982 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:71172983..71173201 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017632.1chromosomeCM017632.1:23648632..23648825 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:24160465..24160658 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:24290607..24290799 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:24277526..24277724 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:39373526..39373736 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:23361023..23361203 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:67215303..67215488 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:42213328..42213498 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_11chromosomeChr_11:16946592..16946768 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:23808572..23808776 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:18654714..18654980 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:14627954..14628228 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:18721328..18721496 -Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:73262724..73262950 +Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:32525191..32525402 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:97835803..97835987 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr11chromosomeGh183:1..757 .
Chr11:23331810..23332547 -		n/a
Chr11chromosomeGh183:1..757 .
Chr11:23103312..23104049 -		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908125DQ908125Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch20_Dt.10N/A0Gh183View
2Yumian-1 x T586, RIL (2015)AD_ch20_Dt.10N/A54.3Gh183View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch20_Dt.10N/A87.7Gh183View
4CCRI-35 x Yumian-1, RIL (2015)AD_ch20_Dt.10N/A92.9Gh183View
5CCRI-35 x Yumian-1, RIL (2017)AD_ch20_Dt.10N/A62.19Gh183View
Sequence
>Gh183 ID=Gh183; Name=Gh183; organism=Gossypium hirsutum; type=genetic_marker; length=201bp
AGCCAGAACCTGATTGAATCAAAATTGAAACCGCAGATCTGATGCAAAAT
TGATCGTCGGTGCTAGAAGAAAAATGAAAAAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGGAGGGGTGGGGTGGAAAAAGCGCGAAGG
GTTCTTCCTCCCACGAAATGCAAATTTTGGTGCTTAAAGAAATATAGCGG
T