Gh119, Gh119 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh119
Genbank IDDQ908061
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908061
Source Typegenomic
Repeat MotifAGA(16)
Primer 1Gh119_F: GTTGAAGCAAGTGAGGATCC
Primer 2Gh119_R: CGGTTATTGGTTCCATTAGTTCAGTCG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908061
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:37546174..37546320 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:35241718..35241879 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:27712212..27712361 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_10chromosomeD10_10:28546406..28546564 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr11chromosomeDt_chr11:40723323..40723469 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:36083483..36083629 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:22645166..22645277 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D10chromosomeGhir_D10:35729670..35729815 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:35112509..35112655 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:35824692..35824838 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:35809693..35809839 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold2202supercontigscaffold2202:518599..518694 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A12chromosomeGbar_A12:42413338..42413449 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D10chromosomeGbar_D10:35094924..35095085 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:35714052..35714213 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:34696878..34697024 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:36485446..36485586 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:35757120..35757281 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:36249811..36249957 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:34947589..34947738 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr_11chromosomeChr_11:24452972..24453125 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:35898803..35898940 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:29296761..29296912 +Gossypium aridum (D4) genome ISU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908061DQ908061Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch20_Dt.10N/A69.9Gh119View
2TM-1 x 3-79, RIL (2012)AD_ch20_Dt.10N/A53.59Gh119View
3Yumian-1 x T586, RIL (2015)AD_ch06_At.06N/A81.4Gh119View
4TM-1 x 3-79, RIL (2014)AD_ch20_Dt.10N/A54.8Gh119View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch20_Dt.10N/A80.5Gh119View
6TM-1 x 3-79, RIL (2012.v3)AD_ch20_Dt.10N/A54.83GH119View
Sequence
>Gh119 ID=Gh119; Name=Gh119; organism=Gossypium hirsutum; type=genetic_marker; length=147bp
GTTGAAGCAAGTGAGGATCCTGAAGAAGAAGAAGAAGAAGAAGAAGAAAA
AGAAGAAGAAGAAGAAGAAGAAGAAGATCCCACAGAGATCGAACTGATGC
AATCAGCAAAATCCCTAATACGACTGAACTAATGGAACCAATAACCG