Gh112, Gh112 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh112
Genbank IDDQ908054
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908054
Source Typegenomic
Repeat MotifTCT(27)
Primer 1Gh112_F: GGTTGGGTTTCCACAATAGC
Primer 2Gh112_R: TGTTGCAACCTTGGAAACC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908054
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A09chromosomeA09:15706875..15707021 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018210.1chromosomeCM018210.1:14689650..14689778 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:16663916..16664080 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr6chromosomeAt_chr6:33650701..33651546 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A09chromosomeA09:15038851..15038997 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A09chromosomeGhir_A09:15790739..15790895 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A09chromosomeA09:15318806..15318952 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:15754877..15755014 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:11595683..11595827 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A09chromosomeA09:16000978..16001124 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A09chromosomeGbar_A09:15096564..15096692 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A09chromosomeA09:15423896..15424024 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:11078939..11079098 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017618.1chromosomeCM017618.1:15429609..15429758 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017644.1chromosomeCM017644.1:15149856..15150017 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017696.1chromosomeCM017696.1:15505972..15506136 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A09chromosomeA09:16021818..16021964 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:16237534..16237707 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:17714391..17714558 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeGh112:1..526 .
Chr06:11472545..11472999 -		n/a
Chr6chromosomeGh112:1..526 .
Chr6:9956659..9957113 +		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908054DQ908054Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch09_At.09N/A45.03Gh112bView
2Yumian-1 x 7235, RIL (2015)AD_ch09_At.09N/A58Gh112bView
3TM-1 x 3-79, RIL (2012)AD_ch09_At.09N/A116.61GH112View
4(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch09_At.09N/A39.8GH112View
5DH962 X Ji Mian 5, F2 (2015)AD_ch09_At.09N/A41.02GH112View
6DH962 X Ji Mian 5, F2 (2015)AD_ch09_At.09N/A41.02GH112View
7TM-1 x 3-79, RIL (2014)AD_ch09_At.09N/A24.9GH112View
8TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch09_At.09N/A74.4GH112View
90-153 x sGK9708, RIL (2016)AD_ch09_At.09N/A0GH112View
10DH962 x Ji Mian 5, RIL (2015)AD_ch09_At.09N/A6.2GH112View
11CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch09_At.09N/A43.5GH112View
12Yumian-1 x 7235, RIL (2015)AD_ch23_Dt.09N/A20Gh112aView
13TM-1 x 3-79, RIL (2012.v3)AD_ch09_At.09N/A24.87GH112View
14TM-1 x Hai-7124, BC1 (2012)AD_ch09_At.09N/A39.8Gh112-135View
15TM-1 x Hai-7124, BC1 (2012)AD_ch23_Dt.09N/A47.3Gh112-140View
Sequence
>Gh112 ID=Gh112; Name=Gh112; organism=Gossypium hirsutum; type=genetic_marker; length=159bp
GGTTGGGTTTCCACAATAGCATATGAAATCATAATGGGTAGCCCATTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTCCCTTCATGGTTTCCAAG
GTTGCAACA