Gh086, Gh086 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh086
AliasGh86
Genbank IDDQ908028
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908028
Source Typegenomic
Repeat MotifTCT(7)
Primer 1Gh086_F: GCTAAGTGATCCTTAACAGGCTTG
Primer 2Gh086_R: GTAAACTTCCATTGGGAAGTTGAG
PolymorphismP_ Gh086
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908028
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:98832477..98832632 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:96885934..96886091 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:126274629..126274787 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr5chromosomeAt_chr5:46768589..46768744 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:91665444..91665599 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:103534341..103534496 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:102528168..102528323 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:100610905..100611060 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:95858239..95858394 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At03chromosomeAt03:93207177..93207334 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5741supercontigscaffold5741:254363..254520 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A03chromosomeGbar_A03:96057362..96057519 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:98335751..98335908 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:97687520..97687675 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:104848325..104848482 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:98685706..98685863 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:104166669..104166824 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:9467029..9467187 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:9420430..9420588 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908028DQ908028Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch03_At.03N/A43.3Gh086View
Sequence
>Gh086 ID=Gh086; Name=Gh086; organism=Gossypium hirsutum; type=genetic_marker; length=156bp
GCTAAGTGATCCTTAACAGGCTTGATACAAAAAAGATGAAATTGGTGATG
GAAGATGAAAGTTCTAATGAGAGACCATGATCCTCTCTTCTTCTTCTTCT
TCTTCTTTTTTTTCTGTTTTCTAAACTCCCCCCTCAACTTCCCAATGGAA
GTTTAC