Gh072, Gh072 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh072
AliasGh72
Genbank IDDQ908014
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908014
Source Typegenomic
Repeat MotifTC(15)
Primer 1Gh072_F: TGTAGGAGTTATTCATGCACTTG
Primer 2Gh072_R: GCGTGAAAATGAGCTTGTC
PolymorphismP_ Gh072
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908014
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:15467765..15467909 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:16664128..16664270 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:14568847..14568987 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:16267616..16267748 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_05chromosomeKI_05:12316250..12316372 -Gossypioides kirkii genome ISU_v3n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:16463096..16463242 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:46659167..46659301 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr9chromosomeDt_chr9:56448718..56448862 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr9chromosomeAt_chr9:44107234..44107374 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:14546151..14546295 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:14941856..14941998 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:15091440..15091584 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:16637354..16637498 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:14705488..14705632 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:16102170..16102312 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:14912627..14912769 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:16650729..16650870 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:14806465..14806609 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:16815065..16815203 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:14990234..14990372 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:15876724..15876856 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:14958901..14959041 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:16552818..16552960 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:14844231..14844371 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:16302870..16303010 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:15329393..15329537 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:16628720..16628870 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:14978336..14978476 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:16113167..16113311 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:15284644..15284788 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:16916059..16916201 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:17460625..17460763 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:16337736..16337882 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_05chromosomeB_05:70066670..70066804 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:14376171..14376303 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_09chromosomeChr_09:12229756..12229890 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:14775797..14775929 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:12370642..12370897 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:10656858..10656988 -Gossypium gossypioides (D6) genome ISU_v1n/a
E05chromosomeE05:17767474..17767596 -Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:14063979..14064106 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:177165925..177166063 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908014DQ908014Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1GX1135 x GX100-2, F2 (2013)AD_ch19_Dt.05N/A37.9GH72View
2GX1135 x GX100-2, RIL (2015)AD_ch19_Dt.05N/A6.4GH72View
3GX1135 x GX100-2, RIL (2016)AD_ch19_Dt.05N/A6.4GH72View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch19_Dt.05N/A139GH72View
50-153 x sGK9708, RIL (2016)AD_ch19_Dt.05N/A50.1Gh072View
Sequence
>Gh072 ID=Gh072; Name=Gh072; organism=Gossypium hirsutum; type=genetic_marker; length=139bp
TGTAGGAGTTATTCATGCACTTGATATTTTCTATTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTGCCTCATCTGCCTTCGTTTTATTACTTGTTTCTAA
ATGTTGAATGAGATTTATTTGACAAGCTCATTTTCACGC