Gh072, Gh072 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh072
AliasGh72
Genbank IDDQ908014
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908014
Source Typegenomic
Repeat MotifTC(15)
Primer 1Gh072_F: TGTAGGAGTTATTCATGCACTTG
Primer 2Gh072_R: GCGTGAAAATGAGCTTGTC
PolymorphismP_ Gh072
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908014
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:15467765..15467909 -
A05chromosomeA05:16664128..16664270 -
CM018219.1chromosomeCM018219.1:14568847..14568987 -
CM018206.1chromosomeCM018206.1:16267616..16267748 -
KI_05chromosomeKI_05:12316250..12316372 -
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:16463096..16463242 -
D10_05chromosomeD10_05:46659167..46659301 +
Dt_chr9chromosomeDt_chr9:56448718..56448862 +
At_chr9chromosomeAt_chr9:44107234..44107374 -
D05chromosomeD05:14546151..14546295 -
A05chromosomeA05:14941856..14941998 -
Ghir_D05chromosomeGhir_D05:15091440..15091584 -
Ghir_A05chromosomeGhir_A05:16637354..16637498 -
D05chromosomeD05:14705488..14705632 -
A05chromosomeA05:16102170..16102312 -
D05chromosomeD05:14912627..14912769 -
A05chromosomeA05:16650729..16650870 -
D05chromosomeD05:14806465..14806609 -
A05chromosomeA05:16815065..16815203 -
Gbar_D05chromosomeGbar_D05:14990234..14990372 -
Gbar_A05chromosomeGbar_A05:15876724..15876856 -
D05chromosomeD05:14958901..14959041 -
A05chromosomeA05:16552818..16552960 -
CM017627.1chromosomeCM017627.1:14844231..14844371 -
CM017614.1chromosomeCM017614.1:16302870..16303010 -
CM017653.1chromosomeCM017653.1:15329393..15329537 -
CM017640.1chromosomeCM017640.1:16628720..16628870 -
CM017705.1chromosomeCM017705.1:14978336..14978476 -
CM017692.1chromosomeCM017692.1:16113167..16113311 -
D05chromosomeD05:15284644..15284788 -
A05chromosomeA05:16916059..16916201 -
Chr05chromosomeChr05:17460625..17460763 -
Chr05chromosomeChr05:16337736..16337882 -
B_05chromosomeB_05:70066670..70066804 +
Chr09chromosomeChr09:14376171..14376303 -
Chr_09chromosomeChr_09:12229756..12229890 -
Chr09chromosomeChr09:14775797..14775929 -
Chr09chromosomeChr09:12370642..12370897 -
Chr09chromosomeChr09:10656858..10656988 -
E05chromosomeE05:17767474..17767596 -
F05chromosomeF05:14063979..14064106 -
Chr13chromosomeChr13:177165925..177166063 +
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908014DQ908014Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1GX1135 x GX100-2, F2 (2013)AD_ch19_Dt.05N/A37.9GH72View
2GX1135 x GX100-2, RIL (2015)AD_ch19_Dt.05N/A6.4GH72View
3GX1135 x GX100-2, RIL (2016)AD_ch19_Dt.05N/A6.4GH72View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch19_Dt.05N/A139GH72View
50-153 x sGK9708, RIL (2016)AD_ch19_Dt.05N/A50.1Gh072View
Sequence
>Gh072 ID=Gh072; Name=Gh072; organism=Gossypium hirsutum; type=genetic_marker; length=139bp
TGTAGGAGTTATTCATGCACTTGATATTTTCTATTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTGCCTCATCTGCCTTCGTTTTATTACTTGTTTCTAA
ATGTTGAATGAGATTTATTTGACAAGCTCATTTTCACGC