Gh058, Gh058 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh058
AliasGh58
Genbank IDDQ908000
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908000
Source Typegenomic
Repeat MotifTCT(26)
Primer 1Gh058_F: GACTTTGAGAGGGATTTTACAGTG
Primer 2Gh058_R: CACCCAATTTAAGCAGAAATTG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908000
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A10chromosomeA10:109460063..109460225 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:2709153..2709329 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr4chromosomeAt_chr4:88750448..88750685 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr3chromosomeDt_chr3:20326864..20326993 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:98441105..98441264 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:30739693..30739770 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D04chromosomeGhir_D04:9288408..9288494 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D03chromosomeGhir_D03:43833659..43833764 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:112318081..112318242 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:112752338..112752503 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:44689180..44689309 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:106859101..106859261 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt12chromosomeDt12:14716689..14716774 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3004supercontigscaffold3004:223982..224085 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8085supercontigscaffold8085:397835..397920 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4048supercontigscaffold4048:121629..121737 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D03chromosomeGbar_D03:43614264..43614348 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D12chromosomeGbar_D12:14678472..14678557 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:107986544..107986637 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
CM017645.1chromosomeCM017645.1:116393310..116393427 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
A10chromosomeA10:115645470..115645632 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:121522173..121522341 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
chr12chromosomechr12:8070274..8070531 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr01chromosomeChr01:20024418..20024683 -Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:10318478..10318778 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr12chromosomeChr12:7798112..7798285 -Gossypium lobatum (D7) genome ISU_v1n/a
Chr01chromosomeChr01:12624955..12625520 -Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908000DQ908000Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch10_At.10N/A19.83Gh058View
2TM-1 x 3-79, RIL (2012)AD_ch10_At.10N/A11.1Gh058View
3TM-1 x 3-79, RIL (2014)AD_ch10_At.10N/A12.2Gh058View
4CCRI-35 x Yumian-1, RIL (2015)AD_ch10_At.10N/A3.6Gh058View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch11_At.11N/A166.2GH58View
6CCRI-35 x Yumian-1, RIL (2017)AD_ch10_At.10N/A125.73Gh058View
7TM-1 x 3-79, RIL (2012.v3)AD_ch10_At.10N/A12.22GH058View
8TM-1 x Hai-7124, BC1 (2012)AD_ch10_At.10N/A8.4Gh58-100View
Sequence
>Gh058 ID=Gh058; Name=Gh058; organism=Gossypium hirsutum; type=genetic_marker; length=142bp
GACTTTGAGAGGGATTTTACAGTGTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTGTTATTAGGGTTTTTTTTCAATTTCTGCTTAAATTGGGTG