Gh027, Gh027 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh027
AliasGh27
Genbank IDDQ907972
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ907972
Source Typegenomic
Repeat MotifCT(13)
Primer 1Gh027_F: CACTAGCATTCGCTTTTTACTGG
Primer 2Gh027_R: GAAAATAATAGATAATGGAGGAGAACAAGG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ907972
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:14283342..14283431 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A09chromosomeA09:20899721..20899806 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018210.1chromosomeCM018210.1:27386051..27386146 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:21941580..21941663 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016622.1chromosomeCM016622.1:70964650..70964735 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr6chromosomeAt_chr6:32713267..32713352 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A09chromosomeA09:20225413..20225498 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A09chromosomeGhir_A09:29086639..29086724 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A09chromosomeA09:31118914..31118999 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:30797556..30797641 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:27930530..27930621 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold5105supercontigscaffold5105:29657..29742 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5105supercontigscaffold5105:26197..26282 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2325supercontigscaffold2325:15526..15621 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D09chromosomeGbar_D09:14276478..14276563 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:28570326..28570421 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A09chromosomeA09:28946150..28946245 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D09chromosomeD09:15374894..15374979 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017618.1chromosomeCM017618.1:28291824..28291913 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017631.1chromosomeCM017631.1:13223887..13223972 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017644.1chromosomeCM017644.1:28426948..28427029 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017657.1chromosomeCM017657.1:12977469..12977554 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017696.1chromosomeCM017696.1:28663521..28663618 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017709.1chromosomeCM017709.1:13399329..13399414 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A09chromosomeA09:31224001..31224086 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:22227214..22227301 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:23215914..23215999 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:13556862..13556947 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:16628194..16628283 -Gossypium anomalum (B1) genome NSF_v1n/a
chr06chromosomechr06:11523531..11523616 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr06chromosomeChr06:11319553..11319640 -Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeGh027:9..436 .
Chr06:13542113..13542535 -		n/a
Chr13chromosomeGh027:9..436 .
Chr13:30445388..30445810 -		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ907972DQ907972Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch09_At.09N/A44.24Gh027View
2TM-1 x 3-79, RIL (2012)AD_ch09_At.09N/A119.34Gh027View
3(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch09_At.09N/A34.2Gh027View
4Yumian-1 x 7235, RIL (2015)AD_ch09_At.09N/A58Gh027View
5TM-1 x 3-79, RIL (2014)AD_ch09_At.09N/A21.9Gh027View
6TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch09_At.09N/A75.9Gh27View
7GX1135 x GX100-2, RIL (2015)AD_ch09_At.09N/A0.1Gh27View
8GX1135 x GX100-2, RIL (2016)AD_ch09_At.09N/A0.1Gh27View
9GX1135 x VGX100-2, RIL (2016)AD_ch09_At.09N/A49.9Gh27View
10TM-1 x 3-79, RIL (2012.v3)AD_ch09_At.09N/A21.9GH027View
11TM-1 x Hai-7124, BC1 (2012)AD_ch09_At.09N/A41.1Gh27-100View
Sequence
>Gh027 ID=Gh027; Name=Gh027; organism=Gossypium hirsutum; type=genetic_marker; length=88bp
CACTAGCATTCGCTTTTTACTGGTTCTCTTCCCTCTCTCTCTCTCTCTCT
CTCTCTCTCCTTGTTCTCCTCCATTATCTATTATTTTC