Gh022, Gh022 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh022
AliasGh22
Genbank IDDQ907968
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ907968
Source Typegenomic
Repeat MotifAGA(8)
Primer 1Gh022_F: CAACTAAGGAAATGAAAATAGAAAAATC
Primer 2Gh022_R: GACTTAGTTTTATCTAGGTTTTCTCTTAGC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ907968
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:8809120..8809205 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D04chromosomeD04:4644157..4644286 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018218.1chromosomeCM018218.1:8084870..8084959 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:42886749..42886834 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_04chromosomeD5_04:46320325..46320454 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_04chromosomeD5_04:46255986..46256114 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_04chromosomeD10_04:8030772..8030854 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold2367.1supercontigscaffold2367.1:107257..107342 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:7991709..7991794 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:8653660..8653745 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:93173298..93173374 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:8480756..8480841 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:8526552..8526637 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:7973832..7973917 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At05chromosomeAt05:82489890..82489969 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2201supercontigscaffold2201:237983..238062 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2877supercontigscaffold2877:139125..139214 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold15948supercontigscaffold15948:25082..25211 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A05chromosomeGbar_A05:92760249..92760328 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D04chromosomeGbar_D04:8138286..8138375 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:61803215..61803301 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D04chromosomeD04:8135989..8136078 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:8196859..8196944 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:8454567..8454652 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:60201989..60202075 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017704.1chromosomeCM017704.1:8141231..8141320 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:9036400..9036485 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:42637291..42637376 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr04chromosomeChr04:46753464..46753593 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr12chromosomeChr12:8357403..8357482 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr12chromosomechr12:7646503..7646582 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_12chromosomeChr_12:5847636..5847718 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:8171964..8172043 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:38537522..38537607 -Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:25339859..25339944 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr12chromosomeChr12:8734200..8734321 -Gossypium gossypioides (D6) genome ISU_v1n/a
E04chromosomeE04:13604810..13604894 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr12chromosomeGh022:1..549 .
Chr12:7951348..7951896 -		n/a
Chr4chromosomeGh022:1..549 .
Chr4:21068014..21068562 +		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ907968DQ907968Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch19_Dt.05N/A193.92GH022View
2TM-1 x 3-79, RIL (2014)AD_ch22_Dt.04N/A38.5GH022View
3TM-1 x 3-79, RIL (2012.v3)AD_ch22_Dt.04N/A38.48Gh022View
4TM-1 x Hai-7124, BC1 (2012)AD_ch22_Dt.04N/A82.9Gh22-95View
Sequence
>Gh022 ID=Gh022; Name=Gh022; organism=Gossypium hirsutum; type=genetic_marker; length=86bp
CAACTAAGGAAATGAAAATAGAAAAATCTAGAAGAAGAAGAAGAAGAAGA
AGAAAAGCTAAGAGAAAACCTAGATAAAACTAAGTC