DPL0922, DPL0922 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0922
Genbank IDGQ394432
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 388
Source SequenceGQ394432
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0922_F: TCTGGGTGGCAATACACTCA
Primer 2DPL0922_R: GGAATTTCCATTCTGCCG
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394432
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
scaffold_2898supercontigscaffold_2898:11497..11722 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D13chromosomeD13:63194756..63194995 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D13chromosomeD13:63520901..63521145 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D13chromosomeD13:63480458..63480678 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:58827229..58827464 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018227.1chromosomeCM018227.1:59189750..59189978 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018227.1chromosomeCM018227.1:59149301..59149521 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018227.1chromosomeCM018227.1:59343295..59343515 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_13chromosomeD10_13:59781110..59781318 -Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr4chromosomeAt_chr4:37414269..37414513 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr4chromosomeAt_chr4:37258841..37259061 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr4chromosomeAt_chr4:37778366..37778605 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:58980539..58980778 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D13chromosomeD13:59356159..59356407 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D13chromosomeD13:59316884..59317104 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D13chromosomeD13:59479156..59479376 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:61739142..61739381 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D13chromosomeGhir_D13:62095095..62095339 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D13chromosomeGhir_D13:62054681..62054901 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D13chromosomeGhir_D13:62248573..62248793 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:62938012..62938251 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:63282446..63282690 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:63242970..63243190 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:63411771..63411991 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:62318467..62318706 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:62689913..62690157 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:62649481..62649701 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:62843389..62843609 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:58576785..58577024 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D13chromosomeD13:58940526..58940770 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D13chromosomeD13:58900080..58900300 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D13chromosomeD13:59094101..59094321 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold12346supercontigscaffold12346:3382..3602 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12276supercontigscaffold12276:63978..64198 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D13chromosomeGbar_D13:58748125..58748360 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Scaffold3245supercontigScaffold3245:13314..13534 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D13chromosomeGbar_D13:59110528..59110756 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D13chromosomeGbar_D13:59070083..59070303 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:59719053..59719288 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D13chromosomeD13:60059274..60059518 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D13chromosomeD13:60018825..60019045 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D13chromosomeD13:60190159..60190379 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:59774801..59775028 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017635.1chromosomeCM017635.1:60076763..60076991 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017635.1chromosomeCM017635.1:60042008..60042228 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:63008837..63009092 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017661.1chromosomeCM017661.1:63254120..63254356 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017661.1chromosomeCM017661.1:63190876..63191096 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017661.1chromosomeCM017661.1:63396142..63396362 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:59485400..59485651 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:63484154..63484393 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D13chromosomeD13:63855387..63855631 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D13chromosomeD13:63814941..63815161 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D13chromosomeD13:64008955..64009175 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:58961470..58961709 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_13chromosomeChr_13:43041876..43042084 -Gossypium harknessii (D2-2) genome ISU_v1n/a
E13chromosomeE13:114188410..114188653 -Gossypium stocksii (E1) genome NSF_v1n/a
E13chromosomeE13:114455984..114456204 -Gossypium stocksii (E1) genome NSF_v1n/a
E13chromosomeE13:114371942..114372163 -Gossypium stocksii (E1) genome NSF_v1n/a
E13chromosomeE13:114260065..114260284 -Gossypium stocksii (E1) genome NSF_v1n/a
Germplasm
Stock NameType
Deltapine 388accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ394432GQ394432Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Monsanto SSR Bin Map, (2009)AD_ch18_Dt.13N/A21DPL0922aView
2Monsanto SSR Bin Map, (2009)AD_ch18_Dt.13N/A21DPL0922bView
3Li2 x DP5690, F2 (2011)AD_ch18_Dt.13N/A1.39DPL0922View
4Yumian-1 x 7235, RIL (2015)AD_ch18_Dt.13N/A47.7DPL0922View
5TM-1 x 3-79, RIL (2014)AD_ch18_Dt.13N/A105.7DPL0922View
6TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch18_Dt.13N/A119.8DPL0922View
70-153 x sGK9708, RIL (2016)AD_ch18_Dt.13N/A37.3DPL0922View
8DH962 X Ji Mian 5, F2 (2015)AD_ch18_Dt.13N/A32.56MON_DPL0922View
9DH962 x Ji Mian 5, RIL (2015)AD_ch18_Dt.13N/A0.7MON_DPL0922View
10TM-1 x 3-79, RIL (2012.v3)AD_ch18_Dt.13N/A105.71DPL0922View
Sequence
>DPL0922 ID=DPL0922; Name=DPL0922; organism=Gossypium hirsutum; type=genetic_marker; length=242bp
TCTGGGTGGCAATACACTCATTAGTTGATCAAAGGGCTTAAAAGGTTGAC
CCTTCTAGAACTTTACACTCACTTGAGAAAGACCCTTCATGTCTGATGAA
AATGGAGCATAGTAGTAGGGATAATACCTAACATTTTAATGGATCTCTCA
TCACGTAGCAATACTAATTCTAGAACATATGTATGTATGTATGTATGTAT
GTATGTATGGTATGGTATGTATTCCGGCAGAATGGAAATTCC