DPL0750, DPL0750 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	DPL0750
Genbank ID	GQ395146
Type	SSR
Species	Gossypium hirsutum
Germplasm	Delta Opal
Source Sequence	GQ395146
Source Type	genomic
PCR Condition	Annealing temperature: 55
Primer 1	DPL0750_F: ACTTTCCAGCCTTTGTAGTTTCAC
Primer 2	DPL0750_R: GGGTGGATTTATACCACACTCATT
Polymorphism	P_ DPL0750
Publication	[view all]
Contact	Monsanto
Comment	Primer data obtained in 2009-05

Contact

Name

Details

Monsanto

Country:

United States

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	GQ395146

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
A04	chromosome	A04:13260640..13260849 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
Chr04_CRI-A2_v1.0.a1	chromosome	Chr04_CRI-A2_v1.0.a1:87940672..87940833 -	Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1	n/a
At_chr12	chromosome	At_chr12:20227378..20227587 +	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
Ghir_A05	chromosome	Ghir_A05:98930788..98930937 -	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
Ghir_A04	chromosome	Ghir_A04:26954679..26954888 -	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
A04	chromosome	A04:25663098..25663307 -	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1	n/a
A04	chromosome	A04:24877659..24877868 -	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
A04	chromosome	A04:27622546..27622755 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a
Chr04	chromosome	Chr04:10912369..10912518 +	Gossypium herbaceum (A1) 'Mutema' genome WHU_v1	n/a
Chr02	chromosome	Chr02:55792765..55792975 +	Gossypium herbaceum (A1) 'Mutema' genome WHU_v1	n/a
Chr04	chromosome	Chr04:10701564..10701727 +	Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1	n/a

Publications


Year	Publication
2009	Xiao J, Wu K, Fang DD, Stelly DM, Yu J, Cantrell RG. New SSR Markers for Use in Cotton (Gossypium spp.) Improvement. Journal of cotton science. 2009; 13(2):75-157

Germplasm


Stock Name	Type
Delta Opal	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
GQ395146	GQ395146	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	TM-1 x 3-79, RIL (2014)	AD_ch05_At.05	N/A	53.6	DPL0750	View
2	CCRI-35 x Yumian-1, RIL (2015)	AD_ch05_At.05	N/A	34.6	DPL0750	View
3	Monsanto SSR Bin Map, (2009)	AD_ch05_At.05	N/A	41	DPL0750	View
4	CCRI-35 x Yumian-1, RIL (2017)	AD_ch05_At.05	N/A	189.83	DPL0750	View
5	TM-1 x 3-79, RIL (2012.v3)	AD_ch05_At.05	N/A	53.62	DPL0750	View

Sequence

>DPL0750 ID=DPL0750; Name=DPL0750; organism=Gossypium hirsutum; type=genetic_marker; length=162bp
ACTTTCCAGCCTTTGTAGTTTCACATCTAATGGTAATTTTACACACACAC
ACACACACACACAAACATACACACACACACACACACACACACCTGTTTAC
GAGAACTCACTGAAATCCATGACCCCCAACCTTGATTGAATGAGTGTGGT
ATAAATCCACCC

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DPL0750, DPL0750 (genetic_marker) Gossypium hirsutum