DPL0707, DPL0707 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0707
Genbank IDGQ395127
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceGQ395127
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0707_F: GATATTGGTTGCCTATCATCCTTG
Primer 2DPL0707_R: GAAGTTCGGTGAGGAAATGAAAC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ395127
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A10chromosomeA10:65666983..65667116 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:65827505..65827659 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:84119963..84120072 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr11chromosomeDt_chr11:44435866..44435999 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr11chromosomeDt_chr11:44431662..44431795 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:58116845..58116978 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:69639415..69639548 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:71201068..71201201 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:69401392..69401525 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:65053366..65053499 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At10chromosomeAt10:59680632..59680786 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11157supercontigscaffold11157:119956..120110 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A10chromosomeGbar_A10:66223137..66223291 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:67701400..67701554 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:66945994..66946121 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:72580334..72580473 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:68711714..68711842 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:72464540..72464673 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:35094776..35094897 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:43862198..43862307 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_10chromosomeB_10:62667265..62667571 +Gossypium anomalum (B1) genome NSF_v1n/a
F10chromosomeF10:35915123..35915324 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:90730275..90730400 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ395127GQ395127Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2014)AD_ch10_At.10N/A77DPL0707aView
2Monsanto SSR Bin Map, (2009)AD_ch10_At.10N/A81DPL0707aView
3TM-1 x 3-79, RIL (2014)AD_ch20_Dt.10N/A56.6DPL0707bView
4Monsanto SSR Bin Map, (2009)AD_ch20_Dt.10N/A81DPL0707bView
5(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch10_At.10N/A22.8MON_DPL0707View
6Yumian-1 x 7235, RIL (2015)AD_ch10_At.10N/A51.8DPL0707View
7TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch20_Dt.10N/A63.7DPL0707View
8GX1135 x GX100-2, RIL (2015)AD_ch10_At.10N/A43.4DPL0707View
9GX1135 x GX100-2, RIL (2016)AD_ch10_At.10N/A43.4DPL0707View
10CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch10_At.10N/A92.9DPL0707View
11GX1135 x GX100-2, F2 (2013)AD_ch10_At.10N/A101.1DPL707View
12TM-1 x 3-79, RIL (2012.v3)AD_ch10_At.10N/A77DPL0707aView
13TM-1 x 3-79, RIL (2012.v3)AD_ch20_Dt.10N/A56.61DPL0707bView
Sequence
>DPL0707 ID=DPL0707; Name=DPL0707; organism=Gossypium hirsutum; type=genetic_marker; length=122bp
GATATTGGTTGCCTATCATCCTTGAGAAGAACAAAAATTAGGTTTTGTTT
TGTATTGTATTGGGGCAAGTTATCTGTTGTTGTTGTTGTTGTTGTTTCTG
TTTCATTTCCTCACCGAACTTC