DPL0533, DPL0533 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	DPL0533
Genbank ID	N/A
Type	SSR
Species	Gossypium hirsutum
Germplasm	Delta Opal
Source Sequence	DPL0533_orig
Source Type	genomic
PCR Condition	Annealing temperature: 55
Primer 1	DPL0533_F: ACTCGCGCAAGTCATAGTAATGT
Primer 2	DPL0533_R: GCATGTGCATGTGTGTGTATGTAT
Publication	[view all]
Contact	Monsanto
Comment	Primer data obtained in 2009-05

Contact

Name

Details

Monsanto

Country:

United States

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
A10	chromosome	A10:2122856..2123000 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
CM018211.1	chromosome	CM018211.1:2048428..2048565 -	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1	n/a
scaffold26.1	supercontig	scaffold26.1:1249333..1249477 +	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
A10	chromosome	A10:2005747..2005891 -	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
Ghir_A10	chromosome	Ghir_A10:1746127..1746271 -	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
A10	chromosome	A10:2050710..2050854 -	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
A10	chromosome	A10:1377086..1377230 -	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1	n/a
A10	chromosome	A10:2174510..2174654 -	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
scaffold9482	supercontig	scaffold9482:68491..68628 +	Gossypium barbadense (AD2) '3-79' genome HAU_v1	n/a
Gbar_A10	chromosome	Gbar_A10:2126925..2127062 -	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
A10	chromosome	A10:2094182..2094319 -	Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1	n/a
A10	chromosome	A10:2144877..2145021 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a
Chr10	chromosome	Chr10:2010057..2010185 -	Gossypium herbaceum (A1) 'Mutema' genome WHU_v1	n/a

Publications


Year	Publication
2009	Xiao J, Wu K, Fang DD, Stelly DM, Yu J, Cantrell RG. New SSR Markers for Use in Cotton (Gossypium spp.) Improvement. Journal of cotton science. 2009; 13(2):75-157

Germplasm


Stock Name	Type
Delta Opal	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
DPL0533_orig	DPL0533_orig	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	TM-1 x 3-79, RIL (2014)	AD_ch10_At.10	N/A	83.5	DPL0533	View
2	TM-1 x (TX-0256 + TX-1046), CSIL (2016)	AD_ch10_At.10	N/A	78.2	DPL0533	View
3	Monsanto SSR Bin Map, (2009)	AD_ch10_At.10	N/A	141	DPL0533	View
4	DH962 X Ji Mian 5, F2 (2015)	AD_ch10_At.10	N/A	54.7	MON_DPL0533	View
5	DH962 x Ji Mian 5, RIL (2015)	AD_ch10_At.10	N/A	27.1	MON_DPL0533	View
6	TM-1 x 3-79, RIL (2012.v3)	AD_ch10_At.10	N/A	83.5	DPL0533	View
7	TM-1 x Hai-7124, BC1 (2012)	AD_ch10_At.10	N/A	111.9	dPL0533-140	View

Sequence

>DPL0533 ID=DPL0533; Name=DPL0533; organism=Gossypium hirsutum; type=genetic_marker; length=145bp
ACTCGCGCAAGTCATAGTAATGTTATAGTACAGATACACACACACACACA
TACATACATACATACATACATACATACATACATACATACATACATACATA
CATACATACATGCATGCATTCATACATACACACACATGCACATGC

Search form

DPL0533, DPL0533 (genetic_marker) Gossypium hirsutum