DPL0509, DPL0509 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	DPL0509
Genbank ID	N/A
Type	SSR
Species	Gossypium hirsutum
Germplasm	Delta Opal
Source Sequence	DPL0509_orig
Source Type	genomic
PCR Condition	Annealing temperature: 55
Primer 1	DPL0509_F: GCAAAGATATTTACAGCTCGTGTG
Primer 2	DPL0509_R: TGGTAATACTCCGTAACCCTGTTT
Publication	[view all]
Contact	Monsanto
Comment	Primer data obtained in 2009-05

Contact

Name

Details

Monsanto

Country:

United States

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis
D01	chromosome	D01:41248626..41248847 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018215.1	chromosome	CM018215.1:40535420..40535657 +	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Dt_chr2	chromosome	Dt_chr2:4139163..4139384 -	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D01	chromosome	D01:38630846..38631087 +	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D01	chromosome	Ghir_D01:40290525..40290746 +	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D01	chromosome	D01:42232653..42232874 +	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D01	chromosome	D01:41666143..41666364 +	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D01	chromosome	D01:39170081..39170302 +	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
scaffold6832	supercontig	scaffold6832:76546..77027 -	Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_D01	chromosome	Gbar_D01:40728923..40729160 +	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D01	chromosome	D01:41558075..41558312 +	Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017649.1	chromosome	CM017649.1:42434642..42434839 +	Gossypium mustelinum (AD4) genome JGI_v1.1
CM017701.1	chromosome	CM017701.1:40906857..40907106 +	Gossypium darwinii (AD5) genome HGS_v1.1
D01	chromosome	D01:42073311..42073532 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr02	chromosome	DPL0509:1..728 . Chr02:43298938..43299604 -

Publications


Year	Publication
2009	Xiao J, Wu K, Fang DD, Stelly DM, Yu J, Cantrell RG. New SSR Markers for Use in Cotton (Gossypium spp.) Improvement. Journal of cotton science. 2009; 13(2):75-157

Germplasm


Stock Name	Type
Delta Opal	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
DPL0509_orig	DPL0509_orig	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	W10 x TM-1, F2:3 (2015)	AD_ch08_At.08	N/A	19.2	MON-DPL0509	View
2	0-153 x sGK9708, RIL (2016)	AD_ch15_Dt.01	N/A	21.1	DPL0509	View
3	CCRI 12-4 x (AD)5-7, F2 (2015)	AD_ch15_Dt.01	N/A	78.9	DPL0509	View
4	CCRI-36 x G2005, RIL (2016)	AD_ch15_Dt.01	N/A	123.7	DPL0509	View

Sequence

>DPL0509 ID=DPL0509; Name=DPL0509; organism=Gossypium hirsutum; type=genetic_marker; length=222bp
GCAAAGATATTTACAGCTCGTGTGATAATCTCTATCCTGAGTATTTGAGG
TTAATTTATTATAGTGTATGTATGTATGTATGTATGTATGTATGTATGTA
TGTATGTATGTATATATGTATGTATGTATGTATGTAGGTATGTACGTATG
TATGTATGTATGTAAATATGTAACACCCCTAACTCGCATTTGACGCCAAA
ACAGGGTTACGGAGTATTACCA

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DPL0509, DPL0509 (genetic_marker) Gossypium hirsutum