DPL0509, DPL0509 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0509
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0509_orig
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0509_F: GCAAAGATATTTACAGCTCGTGTG
Primer 2DPL0509_R: TGGTAATACTCCGTAACCCTGTTT
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:41248626..41248847 +
CM018215.1chromosomeCM018215.1:40535420..40535657 +
Dt_chr2chromosomeDt_chr2:4139163..4139384 -
D01chromosomeD01:38630846..38631087 +
Ghir_D01chromosomeGhir_D01:40290525..40290746 +
D01chromosomeD01:42232653..42232874 +
D01chromosomeD01:41666143..41666364 +
D01chromosomeD01:39170081..39170302 +
scaffold6832supercontigscaffold6832:76546..77027 -
Gbar_D01chromosomeGbar_D01:40728923..40729160 +
D01chromosomeD01:41558075..41558312 +
CM017649.1chromosomeCM017649.1:42434642..42434839 +
CM017701.1chromosomeCM017701.1:40906857..40907106 +
D01chromosomeD01:42073311..42073532 +
Chr02chromosomeDPL0509:1..728 .
Chr02:43298938..43299604 -
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0509_origDPL0509_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1W10 x TM-1, F2:3 (2015)AD_ch08_At.08N/A19.2MON-DPL0509View
20-153 x sGK9708, RIL (2016)AD_ch15_Dt.01N/A21.1DPL0509View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch15_Dt.01N/A78.9DPL0509View
4CCRI-36 x G2005, RIL (2016)AD_ch15_Dt.01N/A123.7DPL0509View
Sequence
>DPL0509 ID=DPL0509; Name=DPL0509; organism=Gossypium hirsutum; type=genetic_marker; length=222bp
GCAAAGATATTTACAGCTCGTGTGATAATCTCTATCCTGAGTATTTGAGG
TTAATTTATTATAGTGTATGTATGTATGTATGTATGTATGTATGTATGTA
TGTATGTATGTATATATGTATGTATGTATGTATGTAGGTATGTACGTATG
TATGTATGTATGTAAATATGTAACACCCCTAACTCGCATTTGACGCCAAA
ACAGGGTTACGGAGTATTACCA