DPL0442, DPL0442 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0442
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0442_orig
Source Typegenomic
Repeat Motif(ATT)12
PCR ConditionAnnealing temperature: 55
Primer 1DPL0442_F: TTACGGTGGCTAATGTAATATCCC
Primer 2DPL0442_R: ATTCTTGAGAGTTCACCAGGAAAG
PolymorphismP_ DPL0442
ContactFang, David D.
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:59760250..59760397 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:57052400..57052571 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:7797107..7797263 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:11274173..11274329 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:8268125..8268275 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_10chromosomeD10_10:8104073..8104253 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_10chromosomeD10_10:8172598..8172766 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_10chromosomeD10_10:8131747..8131930 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr3chromosomeDt_chr3:19646345..19646525 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:56558764..56558911 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:59532174..59532321 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:59235134..59235281 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:58120394..58120571 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:55905759..55905906 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt10chromosomeDt10:59224193..59224355 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold16344supercontigscaffold16344:1048..1210 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:57026141..57026309 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:57934629..57934800 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:57088475..57088610 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:59236397..59236580 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:110026256..110026415 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:58475355..58475538 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:59631391..59631535 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:118303592..118303772 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:54520186..54520342 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:56434954..56435136 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr11chromosomeChr11:56394612..56394779 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:46391096..46391477 -Gossypium armourianum (D2-1) genome ISU_v1n/a
chr11chromosomechr11:46390670..46391240 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:37309029..37309650 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr_11chromosomeChr_11:37308515..37308664 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:57588319..57588490 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:57607455..57607631 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:41386456..41386770 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:40534436..40534765 -Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0442_origDPL0442_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch20_Dt.10N/A92.32DPL0442View
2AD-genome wide Reference Map (2009)AD_ch20_Dt.10N/A33DPL0442View
3Yumian-1 x 7235, RIL (2015)AD_ch20_Dt.10N/A108.1DPL0442View
4DH962 X Ji Mian 5, F2 (2015)AD_ch20_Dt.10N/A74.98DPL0442View
5DH962 x Ji Mian 5, RIL (2015)AD_ch20_Dt.10N/A32.7DPL0442View
6CCRI-35 x Yumian-1, RIL (2015)AD_ch20_Dt.10N/A59DPL0442View
7901-001 x sGK156, F2 (2019)AD_ch20_Dt.10N/A67.93DPL0442View
8(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch20_Dt.10N/A87.9MON_DPL0442View
9DH962 x Jinmian-6, F2 (2009)AD_ch20_Dt.10N/A20.2DPL442View
10DH962 x Jinmian-6, F2 (2009)AD_ch20_Dt.10N/A20.2DPL442View
11CCRI-35 x Yumian-1, RIL (2017)AD_ch20_Dt.10N/A95.09DPL0442View
12PD 94042 x (AD)4-08, F2 (2016)AD_ch20_Dt.10N/A167.3DPL0442View
Sequence
>DPL0442 ID=DPL0442; Name=DPL0442; organism=Gossypium hirsutum; type=genetic_marker; length=148bp
TTACGGTGGCTAATGTAATATCCCAATTCGGATCTAACGTTTAGGTTTAA
TTTAAGGTGTTACAATTATTATTATTATTATTATTATTATTATTATTATT
AAGAAGCCTACTCTTAACCCATGTCTTTCCTGGTGAACTCTCAAGAAT