DPL0441, DPL0441 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0441
Genbank IDGQ395003
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceGQ395003
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0441_F: CTGTTACATTTGCTGGTGTGAGAT
Primer 2DPL0441_R: TCCCTGCACCTTTCATACATTTAG
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ395003
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:7178656..7178904 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:6418622..6418852 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:6251723..6251962 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_06chromosomeD10_06:53690127..53690355 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr10chromosomeDt_chr10:24451267..24451512 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:6211777..6212025 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:7030867..7031113 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:8181702..8181920 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:6786190..6786438 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:7014780..7015022 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:6535873..6536118 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt06chromosomeDt06:6099832..6100062 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold150supercontigscaffold150:85775..86005 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold15446supercontigscaffold15446:40842..41065 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D06chromosomeGbar_D06:6442867..6443097 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D06chromosomeGbar_D06:6462029..6462252 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:6396845..6397075 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:7020578..7020808 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:6611018..6611251 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:6552935..6553165 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:7081409..7081654 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:6136847..6137086 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:89470266..89470483 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:6662081..6662307 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:5843853..5844396 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr10_5059997chromosomeChr10_5059997:2909..3131 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:6893872..6894130 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:4893810..4894067 +Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:4211875..4212095 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:5280847..5281077 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr10chromosomeDPL0441:1..580 .
Chr10:6167550..6168123 +		n/a
Chr10chromosomeDPL0441:1..580 .
Chr10:5922458..5923028 +		n/a
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ395003GQ395003Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x 7235, RIL (2015)AD_ch25_Dt.06N/A63.1DPL0441View
20-153 x sGK9708, RIL (2015)AD_ch25_Dt.06N/A65.92DPL0441View
30-153 x sGK9708, RIL (2016)AD_ch25_Dt.06N/A110.8DPL0441View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch25_Dt.06N/A67.9DPL0441View
5MGG-293-793, MAGIC (2018)AD_ch25_Dt.06N/A42.7DPL0441View
Sequence
>DPL0441 ID=DPL0441; Name=DPL0441; organism=Gossypium hirsutum; type=genetic_marker; length=246bp
CTGTTACATTTGCTGGTGTGAGATTTTGAAATAATAATAATAATAATAAT
AATAATAATAATAATAATAAATTCACTAGGTATCCATGTAACAGAAAAAA
TGAAGTTGTAATATATCAGAATTTAACAAAAAATTTAATGGCATTAACAA
TTGAACTTGCACTTTTAAATTCAGAAAGTAGAGGGGCTAAATTCCTAGAA
ATAAAATTAGGGGGACTAAATTCTAAATGTATGAAAGGTGCAGGGA