DPL0217, DPL0217 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0217
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0217_orig
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0217_F: TAGGGCACAGGGTGATGGT
Primer 2DPL0217_R: TGAAATCCGCAAGTGTTTCAC
PolymorphismP_ DPL0217
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D03chromosomeD03:29330356..29330595 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018217.1chromosomeCM018217.1:30157209..30157448 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:24888269..24888484 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr3chromosomeDt_chr3:3422916..3423158 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold3898_D03supercontigscaffold3898_D03:82423..82662 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D03chromosomeGhir_D03:29579806..29580045 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D03chromosomeD03:31293850..31294089 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:29920469..29920708 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold4502supercontigscaffold4502:576920..577159 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D03chromosomeGbar_D03:28529324..28529562 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D03chromosomeD03:31178159..31178398 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017625.1chromosomeCM017625.1:29549752..29549993 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017651.1chromosomeCM017651.1:33478859..33479098 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017703.1chromosomeCM017703.1:30983594..30983833 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D03chromosomeD03:31548751..31548990 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:26287736..26287952 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr03chromosomeChr03:29756021..29756263 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr03chromosomeChr03:15613900..15614229 +Gossypium lobatum (D7) genome ISU_v1n/a
E02chromosomeE02:52321086..52321324 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr02chromosomeChr02:46495042..46495290 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr03chromosomeDPL0217:1..518 .
Chr03:21979138..21979632 +		n/a
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0217_origDPL0217_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1GX1135 x GX100-2, F2 (2013)AD_ch02_At.02N/A29.7DPL217View
2GX1135 x GX100-2, RIL (2015)AD_ch02_At.02N/A5.4DPL0217View
3GX1135 x GX100-2, RIL (2016)AD_ch02_At.02N/A5.3DPL0217View
4GX1135 x VGX100-2, RIL (2016)AD_ch02_At.02N/A0DPL0217View
Sequence
>DPL0217 ID=DPL0217; Name=DPL0217; organism=Gossypium hirsutum; type=genetic_marker; length=240bp
TAGGGCACAGGGTGATGGTGTGGGGACATATTGGGGTCTTTGTCTTTAGT
TTTTTTTGTTTTGTTTGTAGAGTGGTTTCTAGTATTTTGGGTCAGACTCC
ATATTTAATAGATGATATGGAAATGGATGATGATGATGATGATGGTGATG
ATGATGATGATGATAGCTAGCTATAGCTATTCTAATAAAAGTATGGTGGA
ACATAAAATAAAGAAATTAGTGAAACACTTGCGGATTTCA