DPL0113, DPL0113 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0113
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0113_orig
Source Typegenomic
Repeat Motif(GA)12
PCR ConditionAnnealing temperature: 55
Primer 1DPL0113_F: AAGTTAGTAGCAGCAAATTCTGGC
Primer 2DPL0113_R: GCTTCAAATTTCTGACGAACCTC
PolymorphismP_ DPL0113
ContactFang, David D.
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:13473148..13473367 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A08chromosomeA08:16197555..16197772 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:12632333..12632552 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:15638944..15639161 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:12249258..12249495 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_08chromosomeKI_08:7588748..7589284 +Gossypioides kirkii genome ISU_v3n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:17509163..17509374 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:49988304..49988841 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016621.1chromosomeCM016621.1:121638136..121638347 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr4chromosomeDt_chr4:22367521..22367740 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr4chromosomeAt_chr4:36141072..36141289 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:12570306..12570525 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:15497566..15497783 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:12537736..12537955 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:16309503..16309720 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:12175615..12175834 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:15925330..15925547 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:12034939..12035158 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:16276702..16276919 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:12674418..12674637 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A08chromosomeA08:16072462..16072679 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold5934supercontigscaffold5934:221486..221705 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:12751107..12751326 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:16013839..16014054 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:12827976..12828195 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:15656646..15656861 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:12827163..12827382 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:16070919..16071130 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:13314073..13314290 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:16689880..16690091 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:12663572..12663791 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017695.1chromosomeCM017695.1:15849770..15849980 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:12742837..12743056 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:16825883..16826100 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:17177928..17178141 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:17206236..17206447 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:12084296..12084533 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:17349932..17350143 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:12510257..12510481 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_04chromosomeChr_04:9855055..9855596 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:12514900..12515111 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:9457612..9458285 +Gossypium lobatum (D7) genome ISU_v1n/a
F08chromosomeF08:14833600..14833813 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr08chromosomeChr08:166502391..166502602 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0113_origDPL0113_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch08_At.08N/A53.45DPL0113View
2Yumian-1 x 7235, RIL (2015)AD_ch24_Dt.08N/A44DPL0113View
3TM-1 x 3-79, RIL (2014)AD_ch08_At.08N/A63.3DPL0113View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch08_At.08N/A58.7DPL0113View
5TM-1 x 3-79, RIL (2012.v3)AD_ch08_At.08N/A63.3DPL0113View
Sequence
>DPL0113 ID=DPL0113; Name=DPL0113; organism=Gossypium hirsutum; type=genetic_marker; length=218bp
AAGTTAGTAGCAGCAAATTCTGGCAAGCAAGCAGCAGCGCAGAATTAGAA
GGCAGACTCCGAGTGAGAGAGAGAGAGAGAGAGAGAGAAGTGAAAGATGG
TAAGAGGAAAAGCACTAAGCGCGTATAGGGCTCTTCTAAGAGCCACCCGC
AAATCATTTGCCGGCGACACCTTGATGTTGAACGCCTCTGCCGTTGAGGT
TCGTCAGAAATTTGAAGC