DC40058, DC40058 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDC40058
Genbank IDGQ394576
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceMONCS1599
Source Typegenomic
Primer 1DC40058_F: TGGCAATTAATGGAGTCTG
Primer 2DC40058_R: CCCGTGCTTATTATCGTG
PolymorphismP_ DC40058
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394576
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D09chromosomeD09:22617428..22617583 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
A09chromosomeA09:35815353..35815510 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018223.1chromosomeCM018223.1:20490392..20490543 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_09chromosomeD5_09:15426047..15426218 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1
D10_09chromosomeD10_09:27620125..27620292 -Gossypium turneri (D10) genome NSF_v1_a2
scaffold1345.1supercontigscaffold1345.1:157747..157904 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
Dt_chr6chromosomeDt_chr6:31906711..31906866 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D09chromosomeD09:21552968..21553123 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
A09chromosomeA09:32969595..32969752 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D09chromosomeGhir_D09:22708518..22708673 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_A09chromosomeGhir_A09:37899700..37899855 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D09chromosomeD09:22570751..22570906 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A09chromosomeA09:40094963..40095120 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D09chromosomeD09:22117258..22117413 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A09chromosomeA09:39367151..39367308 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D09chromosomeD09:20566391..20566546 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
A09chromosomeA09:36729884..36730039 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Dt09chromosomeDt09:21876720..21876871 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold2033supercontigscaffold2033:526774..526925 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_D09chromosomeGbar_D09:21101650..21101801 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_A09chromosomeGbar_A09:36023240..36023381 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D09chromosomeD09:23965494..23965645 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017631.1chromosomeCM017631.1:21535422..21535567 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017657.1chromosomeCM017657.1:21989163..21989306 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017709.1chromosomeCM017709.1:21742702..21742851 +Gossypium darwinii (AD5) genome HGS_v1.1
D09chromosomeD09:23471772..23471927 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
A09chromosomeA09:40312794..40312951 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr09chromosomeChr09:20659306..20659471 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
Chr06chromosomeChr06:20719824..20719971 +Gossypium thurberi (D1-5) genome CRI_v1
chr06chromosomechr06:19817336..19817507 -Gossypium armourianum (D2-1) genome ISU_v1
Chr06chromosomeChr06:21497026..21497191 +Gossypium davidsonii (D3d-8) genome CRI_v1
Chr06chromosomeChr06:13527914..13528113 -Gossypium gossypioides (D6) genome ISU_v1
Chr06chromosomeChr06:16679926..16680172 -Gossypium lobatum (D7) genome ISU_v1
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1599MONCS1599Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch23_Dt.09N/A7.7DC40058View
2TM-1 x 3-79, RIL (2014)AD_ch23_Dt.09N/A36.9DC40058View
3TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch23_Dt.09N/A85.4DC40058View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch23_Dt.09N/A46.4DC40058View
5Monsanto SSR Bin Map, (2009)AD_ch23_Dt.09N/A101DC40058View
6TM-1 x 3-79, RIL (2012.v3)AD_ch23_Dt.09N/A36.88DC40058View
Sequence
>DC40058 ID=DC40058; Name=DC40058; organism=Gossypium hirsutum; type=genetic_marker; length=156bp
TGGCAATTAATGGAGTCTGCTAGGACATTAAACATAAGATACTTGTGTAA
GACCATAACTCGACTATGGAAATATGGAGAGAGAGAGAGAGTATGTGTGT
GTGTGTGTGTGTGTGTATGTGTGTGAGGGAGAGTCTGCCACGATAATAAG
CACGGG