CIR0399, CIR0399 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0399
AliasCIR399
Genbank IDAJ567323
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567323
Source Typegenomic
Repeat Motif(CA)9(TA)8(AG)11
PCR ConditionAnnealing temperature: 50
Primer 1CIR399_F: ACACACACACACACACAA
Primer 2CIR399_R: AGAGGTTCACATTTCTCC
Product Length109
PolymorphismP_ CIR0399
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567323
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567323AJ567323Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch11_At.11N/A171CIR399View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch11_At.11N/A153.71CIR399View
3TM-1 x 3-79, RIL (2012)AD_ch11_At.11N/A51.06CIR399View
4Emian-22 x 3-79, BC1 (2011)AD_ch11_At.11N/A151.45CIR399View
5TM-1 x 3-79, RIL (2014)AD_ch11_At.11N/A51.9CIR399View
6AD-genome wide Reference Map (2009)AD_ch11_At.11N/A212cir0399View
7TM-1 x 3-79, RIL (2012.v3)AD_ch11_At.11N/A52.86CIR399View
8PD 94042 x (AD)4-08, F2 (2016)AD_ch11_At.11N/A181.3CIR399View
Sequence
>CIR0399 ID=CIR0399; Name=CIR0399; organism=Gossypium hirsutum; type=genetic_marker; length=109bp
ACACACACACACACACAAAAACATATATATATATATATAGAGAGAGAGAG
AGAGAGAGAGCTTCGTCTAACTTTTGAACCACAATCTCACAGGAGAAATG
TGAACCTCT