CIR0263, CIR0263 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0263
AliasCIR263
Genbank IDAJ567208
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567208
Source Typegenomic
Repeat Motif(TG)4(N)3(TG)6(N)3(TG)4
PCR ConditionAnnealing temperature: 55
Primer 1CIR263_F: ACAGATGATGGATGGATAG
Primer 2CIR263_R: TTCAGGAGTTCAGCGT
Product Length90
PolymorphismP_ CIR0263
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567208
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:102619625..102619717 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:100509403..100509495 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:130020189..130020281 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr5chromosomeAt_chr5:50405759..50405851 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:94856421..94856513 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:107243056..107243148 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:106095043..106095135 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:104309763..104309855 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:99567187..99567279 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A03chromosomeGbar_A03:99662505..99662597 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:102017030..102017120 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:101273653..101273745 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:108477414..108477516 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:102458550..102458642 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:107926666..107926758 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:5709164..5709256 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:5673942..5674034 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeCIR0263:1..287 .
Chr05:59508047..59508352 +		n/a
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567208AJ567208Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch03_At.03N/A60.1CIR263View
2Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch03_At.03N/A103.9CIR263View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch14_Dt.02N/A88.6CIR263View
4Guazuncho-2 x VH8-4602, consensus (2009)AD_ch03_At.03N/A80.74CIR263View
5Guazuncho-2 x VH8-4602, RIL (2009)AD_ch14_Dt.02N/A73.57CIR263View
6Guazuncho-2 x VH8-4602, RIL (2009)AD_ch03_At.03N/A54.29CIR263View
7AD-genome wide Reference Map (2009)AD_ch03_At.03N/A172cir0263View
8PD 94042 x (AD)4-08, F2 (2016)AD_ch03_At.03N/A83.3CIR263View
Sequence
>CIR0263 ID=CIR0263; Name=CIR0263; organism=Gossypium hirsutum; type=genetic_marker; length=90bp
ACAGATGATGGATGGATAGATGTGTGTGTATGTGTGTGTGTGCATGTGTG
TGGTACCTTGTTTTCAGAGTCTCCACGCTGAACTCCTGAA