CIR0239, CIR0239 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0239
AliasCIR239
Genbank IDAJ567184
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567184
Source Typegenomic
Repeat Motif(TG)8
PCR ConditionAnnealing temperature: 55
Primer 1CIR239_F: CCATTTAACCTTGCTTG
Primer 2CIR239_R: GTTCTGTTGGATAGCATTT
Product Length161
PolymorphismP_ CIR0239
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567184
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567184AJ567184Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch14_Dt.02N/A114.5CIR239View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch14_Dt.02N/A79.42CIR239View
3Guazuncho-2 x VH8-4602, RIL (2009)AD_ch14_Dt.02N/A68.62CIR239View
4TM-1 x 3-79, RIL (2012)AD_ch14_Dt.02N/A55.68CIR239View
5TM-1 x 3-79, RIL (2014)AD_ch14_Dt.02N/A70.7CIR239View
6Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch14_Dt.02N/A100.5CIR239aView
7AD-genome wide Reference Map (2009)AD_ch14_Dt.02N/A173cir0239View
8TM-1 x 3-79, RIL (2012.v3)AD_ch14_Dt.02N/A70.74CIR239View
Sequence
>CIR0239 ID=CIR0239; Name=CIR0239; organism=Gossypium hirsutum; type=genetic_marker; length=161bp
CCATTTAACCTTGCTTGACGCATCATCATCATTGTCATGTCTTTGAATCT
GAGTAATAAGTATACTTCGGTTTTGTGTGTGTGTGTGTGTTATAATCATT
CGTGACGGTGGCTTAGTACGAATAAAAACAGCAACGAAGCTGAAATGCTA
TCCAACAGAAC