CIR0171, CIR0171 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0171
AliasCIR171
Genbank IDAJ567118
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567118
Source Typegenomic
Repeat Motif(TG)16(AG)6
PCR ConditionAnnealing temperature: 55
Primer 1CIR171_F: GAAATCCAAATCCAACC
Primer 2CIR171_R: AACCACCCGACTCTTT
Product Length206
PolymorphismP_ CIR0171
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567118
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:47650770..47650978 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:45500029..45500247 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Dt_chr11chromosomeDt_chr11:52142549..52142757 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:45029704..45029912 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:47541207..47541415 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:47774529..47774737 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:46668057..46668265 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:44871123..44871331 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt10chromosomeDt10:47017050..47017267 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3503supercontigscaffold3503:63092..63309 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:45232882..45233098 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:46508489..46508695 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:45269028..45269264 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:47235146..47235354 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D10chromosomeD10:47618609..47618817 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:91259745..91259948 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:42978870..42979085 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:44413934..44414144 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:36336667..36336857 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:29523044..29523226 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:45658591..45658783 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:31753524..31753712 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:24572993..24573326 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:31750558..31750752 +Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567118AJ567118Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch10_At.10N/A28.3CIR171View
2Emian-22 x 3-79, BC1 (2011)AD_ch10_At.10N/A111.04CIR171View
3Guazuncho-2 x VH8-4602, RIL (2009)AD_ch10_At.10N/A11.47CIR171View
4Guazuncho-2 x VH8-4602, RIL (2009)AD_ch20_Dt.10N/A57.32CIR171View
5Guazuncho-2 x VH8-4602, consensus (2009)AD_ch10_At.10N/A60.18CIR171View
6Guazuncho-2 x VH8-4602, consensus (2009)AD_ch20_Dt.10N/A96.18CIR171View
7SG 747 x Giza 75, BIL (2013)AD_ch10_At.10N/A17.8CIR171View
8Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch10_At.10N/A54.6CIR171aView
9Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch20_Dt.10N/A161CIR171bView
10HS-46 x MARCABUCAG8US-1-88, RIL (2009)AD_ch10_At.10N/A0CIR171-211View
11AD-genome wide Reference Map (2009)AD_ch10_At.10N/A35cir0171View
12AD-genome wide Reference Map (2009)AD_ch20_Dt.10N/A82cir0171View
13PD 94042 x (AD)4-08, F2 (2016)AD_ch10_At.10N/A63.7CIR171View
Sequence
>CIR0171 ID=CIR0171; Name=CIR0171; organism=Gossypium hirsutum; type=genetic_marker; length=206bp
GAAATCCAAATCCAACCATTTATATGATTTATCTAATCCCCATACCTTTC
AGTTTTTTTCTTCATATATAATATAGAAAAAGCGAAACAAAAAAGGAAAC
TAATAGAAAAGAGATTGGAGTGTGAGTTTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGAGAGAGAGAGAGTTATAAAAATGTTTGGCCAAAGAGTCGG
GTGGTT