CIR0042, CIR0042 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0042
AliasCIR42
CIR042
Genbank IDAJ566991
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ566991
Source Typegenomic
Repeat Motif(TG)7
PCR ConditionAnnealing temperature: 51
Primer 1CIR042_F: GGGTAGTTCTCAGCTTT
Primer 2CIR042_R: CTATTTCTCTATACCCAAGA
Product Length86
PolymorphismP_ CIR0042
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ566991
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ566991AJ566991Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch12_At.12N/A3.9CIR042View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch12_At.12N/A0CIR042View
3TM-1 x 3-79, RIL (2012)AD_ch12_At.12N/A119CIR042View
4TM-1 x 3-79, RIL (2014)AD_ch12_At.12N/A119CIR042View
5AD-genome wide Reference Map (2009)AD_ch12_At.12N/A5cir0042View
6TM-1 x 3-79, RIL (2012.v3)AD_ch12_At.12N/A119CIR042View
Sequence
>CIR0042 ID=CIR0042; Name=CIR0042; organism=Gossypium hirsutum; type=genetic_marker; length=86bp
GGGTAGTTCTCAGCTTTAGATAGTTTACATNTCTGATTCTCAGAAGGTGT
GTGTGTGTGTTTTTTCTCTTGGGTATAGAGAAATAG