CIR0030, CIR0030 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0030
AliasCIR30
CIR030
Genbank IDAJ566979
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ566979
Source Typegenomic
Repeat Motif(C)8(TC)6(CA)8
PCR ConditionAnnealing temperature: 55
Primer 1CIR030_F: CAATATCTCACTTGGACCT
Primer 2CIR030_R: TGCTACACATCATAGTTGG
Product Length274
PolymorphismP_ CIR0030
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ566979
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ566979AJ566979Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch14_Dt.02N/A47.1CIR030View
2Emian-22 x 3-79, BC1 (2011)AD_ch03_At.03N/A63.78CIR030View
3Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch03_At.03N/A9CIR030View
4Guazuncho-2 x VH8-4602, consensus (2009)AD_ch03_At.03N/A12.21CIR030View
5Guazuncho-2 x VH8-4602, RIL (2009)AD_ch03_At.03N/A8.95CIR030View
6TM-1 x 3-79, RIL (2012)AD_ch03_At.03N/A85.01CIR030View
7TM-1 x 3-79, RIL (2014)AD_ch03_At.03N/A31.4CIR030View
8HS-46 x MARCABUCAG8US-1-88, RIL (2009)AD_ch03_At.03N/A20CIR030-270View
9AD-genome wide Reference Map (2009)AD_ch14_Dt.02N/A12cir0030View
10AD-genome wide Reference Map (2009)AD_ch03_At.03N/A30cir0030View
11TM-1 x 3-79, RIL (2012.v3)AD_ch03_At.03N/A31.36CIR030View
Sequence
>CIR0030 ID=CIR0030; Name=CIR0030; organism=Gossypium hirsutum; type=genetic_marker; length=274bp
CAATATCTCACTTGGACCTCCCCCCCCTCTCTCTCTCTCACACACACACA
CACATATGCATTTATCACTTCATAATTACATGTCATAATATAACCTTATG
AGATAAAAAAAAAACTTTACTATCATGACTAAAAGGTATTCCAAATAATC
TTGTTAATAAATTATGTTAGTATAAAACTAAGGCGACTGGCATTGAAAAT
ATTGTAAATAAACACATCTTTAGTCATGTATATTAATACAACTAAATGAT
ATAGGCCAACTATGATGTGTAGCA