CIR0024, CIR0024 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0024
AliasCIR24
CIR024
Genbank IDAJ566973
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ566973
Source Typegenomic
Repeat Motif(TG)7(N)150(A)12
PCR ConditionAnnealing temperature: 55
Primer 1CIR024_F: TGTAGACAGTCATGTCCTTAT
Primer 2CIR024_R: TGAGTCGGATACATTGC
Product Length220
PolymorphismP_ CIR0024
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ566973
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ566973AJ566973Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch19_Dt.05N/A91.2CIR024View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch19_Dt.05N/A74.14CIR024View
3TM-1 x 3-79, RIL (2012)AD_ch19_Dt.05N/A60.21CIR024View
4TM-1 x 3-79, RIL (2014)AD_ch19_Dt.05N/A125.4CIR024View
5AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A142cir0024View
6TM-1 x Hai-7124, BC1 (2007)AD_ch19_Dt.05N/A65.7CIR024-800View
7TM-1 x Hai-7124, BC1 (2008)AD_ch19_Dt.05N/A65.8CIR024-800View
8TM-1 x Hai-7124, BC1 (2012)AD_ch19_Dt.05N/A125.3CIR024-800View
9TM-1 x 3-79, RIL (2012.v3)AD_ch19_Dt.05N/A125.41CIR024View
Sequence
>CIR0024 ID=CIR0024; Name=CIR0024; organism=Gossypium hirsutum; type=genetic_marker; length=220bp
TGTAGACAGTCATGTCCTTATAAGTTTGGTTATAGTTGTTTCATATGAAA
ATTTTATTCAAATTGAAAAAAAAAAAACCCACTCATATCTCCAAGGTTCT
CTTTTTAGTTACCATTTCTTTTTTGGGGGTTTTAGGGGTCAGCATCTAGC
CTAGGACTCAACCCTTTTCATTTTCATTACATTAGGATAGTGTGTGTGTG
TGAGCAATGTATCCGACTCA