CGR6849, CGR6849 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR6849
Genbank IDGQ394285
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS1250
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR6849_F: ACATGAAGGAATAGGGATCT
Primer 2CGR6849_R: GGAGAGCAAGCAATTGGAGA
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394285
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A06chromosomeA06:98964756..98964878 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018207.1chromosomeCM018207.1:96253738..96253856 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
At_chr10chromosomeAt_chr10:21308885..21309007 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A06chromosomeA06:84355560..84355682 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:51379034..51379138 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:103365162..103365282 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A06chromosomeA06:106266507..106266629 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:105049494..105049616 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:100922319..100922439 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt06chromosomeDt06:49844417..49844525 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7844supercontigscaffold7844:256425..256543 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7934supercontigscaffold7934:157856..157964 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D06chromosomeGbar_D06:47957353..47957459 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:95266642..95266758 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A06chromosomeA06:98466855..98466973 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017615.1chromosomeCM017615.1:101066238..101066368 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017641.1chromosomeCM017641.1:105678913..105679015 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:48480582..48480694 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:99786002..99786130 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A06chromosomeA06:107152388..107152510 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
B_06chromosomeB_06:20816621..20816736 +Gossypium anomalum (B1) genome NSF_v1n/a
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1250MONCS1250Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch06_At.06N/A56CGR6849View
20-153 x sGK9708, RIL (2016)AD_ch06_At.06N/A39.2CGR6849View
3Monsanto SSR Bin Map, (2009)AD_ch06_At.06N/A61CGR6849View
Sequence
>CGR6849 ID=CGR6849; Name=CGR6849; organism=Gossypium hirsutum; type=genetic_marker; length=123bp
ACATGAAGGAATAGGGATCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCACTCAAGGAAGCTCACCCATCCTACTCCTTCCTTCACCT
TATTCTCCAATTGCTTGCTCTCC