CGR6685, CGR6685 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR6685
Genbank IDGQ394140
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS1105
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR6685_F: CGCAGTTATTCCCTTATTAC
Primer 2CGR6685_R: GCCGCCTTCATCAGAGATT
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394140
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A05chromosomeA05:92027687..92027843 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018206.1chromosomeCM018206.1:94737398..94737540 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
A05chromosomeA05:83701287..83701443 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:8731673..8731817 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:100957145..100957301 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:102332186..102332342 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:100944802..100944958 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:98960165..98960321 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At02chromosomeAt02:9573406..9573550 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At02chromosomeAt02:9570533..9570677 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8009supercontigscaffold8009:142774..142916 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2519supercontigscaffold2519:227971..228115 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2519supercontigscaffold2519:225098..225242 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A02chromosomeGbar_A02:8584197..8584341 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:94743142..94743284 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:99803195..99803337 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:96673341..96673497 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:105181397..105181547 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:97629428..97629574 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:102519107..102519263 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:8858420..8858566 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1105MONCS1105Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1DH962 X Ji Mian 5, F2 (2015)AD_ch05_At.05N/A0MON_CGR6685View
2DH962 x Ji Mian 5, RIL (2015)AD_ch25_Dt.06N/A0MON_CGR6685View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch05_At.05N/A201.2CGR6685View
Sequence
>CGR6685 ID=CGR6685; Name=CGR6685; organism=Gossypium hirsutum; type=genetic_marker; length=157bp
CGCAGTTATTCCCTTATTACTTCTTTTCGTTCTTTTCTTTACAGAAGGTT
TTAAATAACACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGACTTACT
GGGGTCGAGCTCGTGTCGTCGGCGACCTGGGCGCGCCGAATCTCTGATGA
AGGCGGC