CGR6517, CGR6517 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR6517
Genbank IDGQ394087
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS1052
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR6517_F: GAAGAACCCATGTAGGGTTATCA
Primer 2CGR6517_R: CAGAGGTTTGGGCAGATTGT
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394087
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A11chromosomeA11:78034915..78035048 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018212.1chromosomeCM018212.1:83602939..83603076 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:29828705..29828888 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr1chromosomeAt_chr1:33094698..33094831 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A11chromosomeA11:63170137..63170270 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:91457991..91458124 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:90046495..90046628 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:87195874..87196007 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:85035233..85035364 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold5429supercontigscaffold5429:425445..425582 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A11chromosomeGbar_A11:81724119..81724256 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:85031948..85032085 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:87964384..87964517 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:83874741..83874878 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:91670418..91670551 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:94671720..94671847 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:98461627..98461808 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1052MONCS1052Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Monsanto SSR Bin Map, (2009)AD_ch11_At.11N/A101CGR6517aView
2Monsanto SSR Bin Map, (2009)AD_ch21_Dt.11N/A101CGR6517bView
3DH962 X Ji Mian 5, F2 (2015)AD_ch11_At.11N/A72.23MON_CGR6517View
4DH962 x Ji Mian 5, RIL (2015)AD_ch11_At.11N/A6.9MON_CGR6517View
5TM-1 x Hai-7124, BC1 (2012)AD_ch11_At.11N/A86.8cgr6517-150View
Sequence
>CGR6517 ID=CGR6517; Name=CGR6517; organism=Gossypium hirsutum; type=genetic_marker; length=132bp
GAAGAACCCATGTAGGGTTATCATAGATGTGTGTGTGTGTGTGTGTGCAT
ATATCTTCGTAAAATCCAATTGAACCTTTACAAAGTCGAATACCATGCTA
TACATTCTTTTTACAATCTGCCCAAACCTCTG