CGR6477, CGR6477 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR6477
Genbank IDGQ394070
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS1035
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR6477_F: CGGCATATCCTACAGTATGTCT
Primer 2CGR6477_R: ATTTAAGCAAGTCCCGCTTT
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394070
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:60656031..60656230 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:56829053..56829252 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:2876181..2876372 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_12chromosomeD10_12:51830939..51831131 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold1841.1supercontigscaffold1841.1:8308..8507 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:56843551..56843750 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:59509992..59510191 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:104435411..104435611 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:58708975..58709425 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:59559195..59559394 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:57637349..57637537 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt12chromosomeDt12:60268034..60268233 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold22941supercontigscaffold22941:158230..158432 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold14951supercontigscaffold14951:59753..59952 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D12chromosomeGbar_D12:56035416..56035614 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:99034997..99035199 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:57814826..57815025 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:57670058..57670256 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017621.1chromosomeCM017621.1:99750686..99750888 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:60667204..60667402 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:58238509..58238707 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:98923282..98923484 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:60055826..60056025 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:54859257..54859449 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:86090526..86090694 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:55260644..55260829 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_08chromosomeChr_08:40808667..40808934 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:56818884..56819045 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:39889533..39889810 -Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:31284686..31284881 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:38260932..38261192 -Gossypium lobatum (D7) genome ISU_v1n/a
E12chromosomeE12:110855072..110855270 -Gossypium stocksii (E1) genome NSF_v1n/a
F12chromosomeF12:88492936..88493114 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1035MONCS1035Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch26_Dt.12N/A18.2MON_CGR6477View
2GX1135 x VGX100-2, RIL (2016)AD_ch26_Dt.12N/A27CGR6477View
3LMY22 x LY343, RIL (2020)A12N/A69.08CGR6477View
Sequence
>CGR6477 ID=CGR6477; Name=CGR6477; organism=Gossypium hirsutum; type=genetic_marker; length=200bp
CGGCATATCCTACAGTATGTCTATTTATGGTTTTTTTCAACTGGATGCAT
ACAGCAAATAAAACCAAAAAAAAAAAAAAGAAAAGAGAAAGAAGAAGAAG
AAGAAGAAGAAAGAATGGGTTTTGTGCGATTGTGTGTGTTGTCTGTTTGA
TTTCTTAATCTCTCAGAAGGCAACTTATGAAAAGCGGGACTTGCTTAAAT