CGR6019, CGR6019 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR6019
Genbank IDGQ393872
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0837
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR6019_F: CATCGTCATATTCATGCAACAG
Primer 2CGR6019_R: GGCATCTAATACGGGTAAGGG
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393872
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A06chromosomeA06:92947728..92947883 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018207.1chromosomeCM018207.1:89323449..89323618 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:102909910..102910075 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr10chromosomeAt_chr10:61505976..61506131 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A06chromosomeA06:79424139..79424294 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A06chromosomeGhir_A06:95987114..95987269 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A06chromosomeA06:98857236..98857391 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:97694298..97694451 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:93999648..93999803 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold7578supercontigscaffold7578:6194..6363 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A06chromosomeGbar_A06:88530600..88530765 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A06chromosomeA06:91455681..91455848 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017615.1chromosomeCM017615.1:94172793..94172952 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017641.1chromosomeCM017641.1:98039336..98039487 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017693.1chromosomeCM017693.1:92801484..92801651 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A06chromosomeA06:100076920..100077075 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:103886058..103886221 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:103968326..103968490 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0837MONCS0837Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch06_At.06N/A68.3CGR6019View
2Monsanto SSR Bin Map, (2009)AD_ch06_At.06N/A61CGR6019View
3DH962 X Ji Mian 5, F2 (2015)AD_ch06_At.06N/A31.26MON_CGR6019View
4DH962 x Ji Mian 5, RIL (2015)AD_ch06_At.06N/A35.2MON_CGR6019View
5TM-1 x Hai-7124, BC1 (2012)AD_ch06_At.06N/A58.6cgr6019-170View
Sequence
>CGR6019 ID=CGR6019; Name=CGR6019; organism=Gossypium hirsutum; type=genetic_marker; length=154bp
CATCGTCATATTCATGCAACAGATTATATACTTCATTTACACACTTGTAG
ATGCTTCACAGAAAACACACACACACACACACACATACATACATACATAC
ATACAACAACTCCTCAAGCACAACTTGTAACACCCCTTACCCGTATTAGA
TGCC