CGR5675, CGR5675 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5675
Genbank IDGQ393655
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0620
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5675_F: GGCCGAACAGAAAGAACAAG
Primer 2CGR5675_R: CTTGTCGAAGACTGACGTGC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393655
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:65818688..65818867 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:61953541..61953714 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:4966420..4966593 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_03chromosomeKI_03:38225743..38225904 -Gossypioides kirkii genome ISU_v3n/a
D10_03chromosomeD10_03:4859488..4859661 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr5chromosomeDt_chr5:11884919..11885098 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:62847368..62847547 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:64653491..64653670 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:106922338..106922493 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:64781627..64781806 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:65990358..65990537 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:63115405..63115578 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold5463supercontigscaffold5463:17735..17890 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold36673supercontigscaffold36673:30580..30753 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D02chromosomeGbar_D02:62551443..62551616 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A03chromosomeGbar_A03:99376711..99376866 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:63859661..63859834 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:64898399..64898578 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:66511777..66511950 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:63431849..63432022 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:66998616..66998795 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:58128741..58128914 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_03chromosomeB_03:6189474..6189635 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:61095685..61095852 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_05chromosomeChr_05:39739089..39739386 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:62647516..62647689 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:40131403..40131564 -Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:41827642..41827821 -Gossypium lobatum (D7) genome ISU_v1n/a
E03chromosomeE03:119191197..119191364 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr05chromosomeCGR5675:1..418 .
Chr05:59246634..59247045 -		n/a
Chr5chromosomeCGR5675:1..418 .
Chr5:38364313..38364724 +		n/a
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0620MONCS0620Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x 7235, RIL (2015)AD_ch14_Dt.02N/A81.9CGR5675View
2W10 x TM-1, F2:3 (2015)AD_ch14_Dt.02N/A23.7CGR5675View
3GX1135 x GX100-2, F2 (2013)AD_ch14_Dt.02N/A37.6CGR5675View
4GX1135 x GX100-2, RIL (2016)AD_ch14_Dt.02N/A95.2CGR5675View
5Monsanto SSR Bin Map, (2009)AD_ch14_Dt.02N/A41CGR5675View
6(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch14_Dt.02N/A63.8MON_CGR5675View
7TM-1 x Hai-7124, BC1 (2012)AD_ch14_Dt.02N/A71.9cgr5675-175View
Sequence
>CGR5675 ID=CGR5675; Name=CGR5675; organism=Gossypium hirsutum; type=genetic_marker; length=180bp
GGCCGAACAGAAAGAACAAGAACCTAACCCTAACCCTAACCCTAATGGTA
ACGGCAACGGCAATGAAAATTTGAACACTGAAAGTGAACATGAAGAAAGA
CAAGAAGACAGGCATGAACATGAACAGGAACAGGAACAGGAACAGGAACG
AGAGCAGCCGGCACGTCAGTCTTCGACAAG