CGR5643, CGR5643 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5643
Genbank IDGQ393627
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0592
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5643_F: AGGTAAGGCAATGGCACAAC
Primer 2CGR5643_R: CCATGATCACCTTCTATCCCTC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393627
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:7153063..7153188 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:6392994..6393125 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:6228809..6228934 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr10chromosomeDt_chr10:24477073..24477198 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:6186184..6186309 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:7005286..7005411 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:6760439..6760564 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:6989156..6989281 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:6510280..6510405 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt06chromosomeDt06:6060687..6060818 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Dt06chromosomeDt06:6057026..6057157 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold150supercontigscaffold150:46630..46761 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold150supercontigscaffold150:42969..43100 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D06chromosomeGbar_D06:6417239..6417370 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:6371583..6371714 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:6995086..6995211 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:6585380..6585511 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:6527306..6527437 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:7055816..7055941 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:6113973..6114098 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0592MONCS0592Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
10-153 x sGK9708, RIL (2015)AD_ch25_Dt.06N/A63.99CGR5643View
20-153 x sGK9708, RIL (2016)AD_ch25_Dt.06N/A112CGR5643View
3Monsanto SSR Bin Map, (2009)AD_ch25_Dt.06N/A61CGR5643View
4TM-1 x Hai-7124, BC1 (2012)AD_ch25_Dt.06N/A59.7cgr5643-160View
Sequence
>CGR5643 ID=CGR5643; Name=CGR5643; organism=Gossypium hirsutum; type=genetic_marker; length=127bp
AGGTAAGGCAATGGCACAACAATGGTGAAAACACCTTGTTTGGGACAGCA
TGAGGAAAATGAAAGGGGAAAATTGAGAGAGAATGGGAGAGGGAGAGGGA
GAGGTGAGGGATAGAAGGTGATCATGG