CGR5602, CGR5602 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5602
Genbank IDGQ393596
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0561
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5602_F: ATCGCCATTGTTTACTGCTA
Primer 2CGR5602_R: ACCCTTCCACCATTAAACCC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393596
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D11chromosomeD11:15251541..15251699 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018225.1chromosomeCM018225.1:14253905..14254058 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_11chromosomeD5_11:51736163..51736296 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1
D10_11chromosomeD10_11:13824883..13825030 +Gossypium turneri (D10) genome NSF_v1_a2
Dt_chr7chromosomeDt_chr7:11987988..11988146 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D11chromosomeD11:14664478..14664636 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D11chromosomeGhir_D11:14848374..14848532 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_A11chromosomeGhir_A11:17315307..17315449 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D11chromosomeD11:14479010..14479168 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D11chromosomeD11:14851689..14851847 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D11chromosomeD11:14634801..14634959 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Dt11chromosomeDt11:16595152..16595305 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold14750supercontigscaffold14750:354229..354382 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold2293supercontigscaffold2293:88113..88255 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_D11chromosomeGbar_D11:14552723..14552876 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_A11chromosomeGbar_A11:16418756..16418898 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D11chromosomeD11:14446413..14446566 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017633.1chromosomeCM017633.1:14370198..14370351 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017659.1chromosomeCM017659.1:14755793..14755946 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017711.1chromosomeCM017711.1:14539269..14539432 +Gossypium darwinii (AD5) genome HGS_v1.1
D11chromosomeD11:15127641..15127799 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr11chromosomeChr11:49657851..49657984 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
chr07chromosomechr07:11936292..11936439 +Gossypium armourianum (D2-1) genome ISU_v1
Chr_07chromosomeChr_07:12356563..12356707 +Gossypium harknessii (D2-2) genome ISU_v1
Chr07chromosomeChr07:14334053..14334195 +Gossypium davidsonii (D3d-8) genome CRI_v1
Chr07chromosomeChr07:11221968..11222125 +Gossypium aridum (D4) genome ISU_v1
Chr07chromosomeChr07:9967805..9967952 +Gossypium gossypioides (D6) genome ISU_v1
Chr07chromosomeChr07:11546372..11546514 +Gossypium lobatum (D7) genome ISU_v1
F11chromosomeF11:14935475..14935655 +Gossypium longicalyx (F1) genome NSF_v1
Chr07chromosomeCGR5602:1..490 .
Chr07:13939074..13939632 +
Chr7chromosomeCGR5602:1..490 .
Chr7:40432738..40433284 -
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0561MONCS0561Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch21_Dt.11N/A68.6CGR5602View
2GX1135 x GX100-2, F2 (2013)AD_ch11_At.11N/A63.8CGR5602View
3GX1135 x GX100-2, RIL (2015)AD_ch21_Dt.11N/A142.9CGR5602View
4GX1135 x GX100-2, RIL (2016)AD_ch21_Dt.11N/A142.9CGR5602View
5Monsanto SSR Bin Map, (2009)AD_ch21_Dt.11N/A61CGR5602View
6TM-1 x Hai-7124, BC1 (2012)AD_ch21_Dt.11N/A63.5cgr5602-150View
Sequence
>CGR5602 ID=CGR5602; Name=CGR5602; organism=Gossypium hirsutum; type=genetic_marker; length=160bp
ATCGCCATTGTTTACTGCTAGTAAAGACCCTAAGCCTAACCTAACCTAAC
CTAACGTGAGGCTGCATACTGCTCGCAAAATCATTAGGTAGCAATGGGTA
CAGTTACAGTGAAGTTGGTTGTTGTGATTATGATAACGGTGGGTTTAATG
GTGGAAGGGT