CGR5565, CGR5565 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5565
Genbank IDGQ393565
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0530
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5565_F: GCCATTAACCCATTAGGCAA
Primer 2CGR5565_R: GCCATTGGAGCTTATAAGGATG
PolymorphismP_ CGR5565
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393565
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D10chromosomeD10:1966846..1967013 +
A10chromosomeA10:2015867..2016037 +
CM018224.1chromosomeCM018224.1:1834661..1834819 +
CM018211.1chromosomeCM018211.1:1905021..1905170 -
D5_10chromosomeD5_10:60701438..60701596 -
KI_10chromosomeKI_10:45678647..45678802 -
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:127445678..127445845 -
D10_10chromosomeD10_10:62218403..62218560 -
CM016623.1chromosomeCM016623.1:2460015..2460173 +
scaffold1957.1supercontigscaffold1957.1:70044..70211 +
scaffold26.1supercontigscaffold26.1:1357086..1357253 -
D10chromosomeD10:1685027..1685194 +
A10chromosomeA10:1901126..1901296 +
Ghir_D10chromosomeGhir_D10:2205322..2205489 +
Ghir_A10chromosomeGhir_A10:1639252..1639419 +
D10chromosomeD10:1941246..1941413 +
A10chromosomeA10:1945994..1946164 +
D10chromosomeD10:2009629..2009794 +
A10chromosomeA10:1270112..1270282 +
D10chromosomeD10:2058608..2058775 +
A10chromosomeA10:2067361..2067528 +
At10chromosomeAt10:2150582..2150734 -
scaffold2415supercontigscaffold2415:413858..414010 -
scaffold20666supercontigscaffold20666:7613..8050 -
Gbar_D10chromosomeGbar_D10:1862680..1862838 +
Gbar_A10chromosomeGbar_A10:1983530..1983694 -
D10chromosomeD10:1904082..1904240 +
A10chromosomeA10:1950075..1950224 -
CM017632.1chromosomeCM017632.1:1887568..1887735 +
CM017619.1chromosomeCM017619.1:2100190..2100354 +
CM017658.1chromosomeCM017658.1:1942829..1942987 +
CM017645.1chromosomeCM017645.1:2123552..2123719 +
CM017710.1chromosomeCM017710.1:1914447..1914605 +
CM017697.1chromosomeCM017697.1:1975200..1975364 +
D10chromosomeD10:2001631..2001798 +
A10chromosomeA10:2037886..2038056 +
Chr10chromosomeChr10:1905817..1905984 +
Chr10chromosomeChr10:1891506..1891673 +
Chr10chromosomeChr10:1699935..1700093 +
B_10chromosomeB_10:97246997..97247152 +
Chr11chromosomeChr11:1685508..1685669 +
chr11chromosomechr11:1774964..1775122 +
Chr_11chromosomeChr_11:1408769..1408927 +
Chr11chromosomeChr11:1904313..1904471 +
Chr11chromosomeChr11:1432056..1432214 +
Chr11chromosomeChr11:1367308..1367463 +
Chr11chromosomeChr11:1745198..1745356 +
E10chromosomeE10:111519938..111520093 -
F10chromosomeF10:1893542..1893700 +
Chr10chromosomeChr10:167556894..167557052 -
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0530MONCS0530Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
10-153 x sGK9708, RIL (2016)AD_ch20_Dt.10N/A0CGR5565bView
2Monsanto SSR Bin Map, (2009)AD_ch10_At.10N/A141CGR5565bView
30-153 x sGK9708, RIL (2016)AD_ch20_Dt.10N/A25.7CGR5565aView
4Monsanto SSR Bin Map, (2009)AD_ch20_Dt.10N/A121CGR5565aView
5(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch20_Dt.10N/A3.7MON_CGR5565View
6CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch20_Dt.10N/A171.6CGR5565View
7CCRI-35 x Yumian-1, RIL (2015)AD_ch20_Dt.10N/A10.5CGR5565View
8901-001 x sGK156, F2 (2019)AD_ch20_Dt.10N/A87.25CGR5565View
9LMY22 x LY343, RIL (2020)A10N/A151.69CGR5565View
10CCRI-35 x Yumian-1, RIL (2017)AD_ch20_Dt.10N/A9.13CGR5565View
11TM-1 x Hai-7124, BC1 (2012)AD_ch10_At.10N/A115.2cgr5565-150View
12TM-1 x Hai-7124, BC1 (2012)AD_ch20_Dt.10N/A99.3cgr5565-160View
Sequence
>CGR5565 ID=CGR5565; Name=CGR5565; organism=Gossypium hirsutum; type=genetic_marker; length=156bp
GCCATTAACCCATTAGGCAATTCTCTCATCAAGTCACCCTTTTCATCATC
ATCATCATCATCATCATCATCAAAATCACTACACTCACTTTCTTTCCTTT
TCTTTTTCTTCTTCTCAGCTTCTCTTTTCAAAACCATCCTTATAAGCTCC
AATGGC