CGR5324, CGR5324 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5324
Genbank IDGQ393415
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0380
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5324_F: CGGTTTCTTTGCAGGATGAA
Primer 2CGR5324_R: CAAGGGAAAGCAAAGCTACG
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393415
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D12chromosomeD12:39468977..39469163 +
A12chromosomeA12:72459973..72460123 +
CM018226.1chromosomeCM018226.1:36342674..36342865 +
CM018213.1chromosomeCM018213.1:69845894..69846048 +
D5_12chromosomeD5_12:22978926..22979127 -
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:31571453..31571611 -
D10_12chromosomeD10_12:31627229..31627397 +
CM016625.1chromosomeCM016625.1:98687715..98687869 +
Dt_chr8chromosomeDt_chr8:23626769..23626956 +
D12chromosomeD12:35616641..35616828 +
A12chromosomeA12:59199147..59199297 +
Ghir_D12chromosomeGhir_D12:38756060..38756241 +
Ghir_A12chromosomeGhir_A12:77476521..77476671 +
D12chromosomeD12:38041600..38041792 +
A12chromosomeA12:78709606..78709756 +
D12chromosomeD12:38721150..38721336 +
A12chromosomeA12:75493388..75493574 +
D12chromosomeD12:36499283..36499471 +
A12chromosomeA12:72656081..72656231 +
Dt12chromosomeDt12:36644881..36645591 +
scaffold5789supercontigscaffold5789:218171..218881 +
scaffold22731supercontigscaffold22731:4388..4577 -
Gbar_D12chromosomeGbar_D12:35744205..35744395 +
Gbar_A12chromosomeGbar_A12:72184822..72184976 +
D12chromosomeD12:36963144..36963347 +
A12chromosomeA12:71949794..71950017 +
CM017634.1chromosomeCM017634.1:36733324..36733521 +
CM017660.1chromosomeCM017660.1:39166970..39167161 +
CM017712.1chromosomeCM017712.1:37455936..37456128 +
CM017699.1chromosomeCM017699.1:72179363..72179518 +
D12chromosomeD12:38793180..38793366 +
A12chromosomeA12:78697022..78697172 +
Chr12chromosomeChr12:78353003..78353158 +
Chr12chromosomeChr12:34787290..34787489 +
B_12chromosomeB_12:59204222..59204394 +
Chr08chromosomeChr08:35054694..35054856 +
chr08chromosomechr08:26888092..26888254 +
Chr_08chromosomeChr_08:24676759..24677013 +
Chr08chromosomeChr08:36184721..36184886 +
Chr08chromosomeChr08:24387402..24387674 +
Chr08chromosomeChr08:19187333..19187499 +
E12chromosomeE12:80176465..80176627 +
Chr12chromosomeChr12:39926188..39926354 -
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0380MONCS0380Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1W10 x TM-1, F2:3 (2015)AD_ch12_At.12N/A49.5CGR5324View
2CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch12_At.12N/A47.9CGR5324View
3Monsanto SSR Bin Map, (2009)AD_ch12_At.12N/A61CGR5324View
4(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch12_At.12N/A111.7MON_CGR5324View
5DH962 X Ji Mian 5, F2 (2015)AD_ch12_At.12N/A42.3MON_CGR5324View
6DH962 x Ji Mian 5, RIL (2015)AD_ch12_At.12N/A0MON_CGR5324View
7TM-1 x Hai-7124, BC1 (2012)AD_ch26_Dt.12N/A58cgr5324-290View
Sequence
>CGR5324 ID=CGR5324; Name=CGR5324; organism=Gossypium hirsutum; type=genetic_marker; length=190bp
CGGTTTCTTTGCAGGATGAAGAGCTAAGTTTTCTGCTGATGGATATAGTT
TAGTCGTGACAGTTATTGGGAAAAAGGGTGAGGGTATTGCAAAAATAGGC
TTTAGTTTTTCTTCTTCTTCTTCTTCTTCTTCTTTTTTTTTTTTTTTTTT
CTTGGTTGTATTAAAATGGGCGTAGCTTTGCTTTCCCTTG