CGR5015, CGR5015 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5015
Genbank IDGQ393190
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0155
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5015_F: AGTGATGGTGGAGGGACAAA
Primer 2CGR5015_R: CTCTCCTATCCCAACCTCCA
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393190
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D11chromosomeD11:71597579..71597717 -
A11chromosomeA11:112594094..112594232 -
CM018225.1chromosomeCM018225.1:67946772..67946913 -
CM018212.1chromosomeCM018212.1:112950134..112950281 -
D5_11chromosomeD5_11:1606595..1606730 +
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:2064907..2065045 +
D10_11chromosomeD10_11:66197462..66197591 -
CM016624.1chromosomeCM016624.1:142589810..142589942 -
scaffold1088.1supercontigscaffold1088.1:53200..53338 -
D11chromosomeD11:64352124..64352262 -
A11chromosomeA11:91532054..91532192 -
Ghir_D11chromosomeGhir_D11:71245691..71245829 -
Ghir_A11chromosomeGhir_A11:121398745..121398883 -
D11chromosomeD11:69734895..69735033 -
A11chromosomeA11:119700972..119701110 -
D11chromosomeD11:70834005..70834143 -
A11chromosomeA11:117573138..117573276 -
D11chromosomeD11:67557766..67557904 -
A11chromosomeA11:114050871..114051009 -
Dt11chromosomeDt11:64700235..64700376 -
scaffold7329supercontigscaffold7329:390167..390539 +
scaffold15997supercontigscaffold15997:228526..228667 -
Gbar_D11chromosomeGbar_D11:67809469..67809610 -
Gbar_A11chromosomeGbar_A11:111292827..111292974 -
D11chromosomeD11:70672932..70673073 -
A11chromosomeA11:114457315..114457462 -
CM017633.1chromosomeCM017633.1:69235707..69235848 -
CM017620.1chromosomeCM017620.1:118696227..118696365 -
CM017659.1chromosomeCM017659.1:71835965..71836106 -
CM017646.1chromosomeCM017646.1:124998258..124998396 -
CM017711.1chromosomeCM017711.1:67376124..67376265 -
CM017698.1chromosomeCM017698.1:113281010..113281151 -
D11chromosomeD11:71152801..71152939 -
A11chromosomeA11:122385575..122385713 -
Chr11chromosomeChr11:130673441..130673591 -
Chr11chromosomeChr11:129444172..129444310 -
Chr11chromosomeChr11:1458988..1459123 +
B_11chromosomeB_11:100320697..100320823 -
Chr07chromosomeChr07:67929580..67929712 -
chr07chromosomechr07:48871477..48871615 -
Chr_07chromosomeChr_07:47900049..47900181 -
Chr07chromosomeChr07:70068229..70068370 -
Chr07chromosomeChr07:44399658..44399796 -
Chr07chromosomeChr07:36645062..36645199 -
E11chromosomeE11:115018709..115018847 -
F11chromosomeF11:98000459..98000591 -
Chr11chromosomeChr11:3040434..3040566 +
Chr07chromosomeCGR5015:4..516 .
Chr07:59433276..59434032 -
Chr8chromosomeCGR5015:4..516 .
Chr8:6532761..6533517 +
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0155MONCS0155Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch21_Dt.11N/A166CGR5015View
2Monsanto SSR Bin Map, (2009)AD_ch21_Dt.11N/A161CGR5015View
3DH962 X Ji Mian 5, F2 (2015)AD_ch21_Dt.11N/A6.89MON_CGR5015View
4DH962 x Ji Mian 5, RIL (2015)AD_ch21_Dt.11N/A0MON_CGR5015View
5TM-1 x Hai-7124, BC1 (2012)AD_ch11_At.11N/A150.8cgr5015-340View
Sequence
>CGR5015 ID=CGR5015; Name=CGR5015; organism=Gossypium hirsutum; type=genetic_marker; length=139bp
AGTGATGGTGGAGGGACAAAGCCTGAACTCAGGCGTCAAGGACAGGCGAA
TAGTTATGCTACAGCCGGACGAGATGCCGCTGCCGGTGGTGGTGGTGGTG
GTGGTCGGAATAATAGAAGTGGAGGTTGGGATAGGAGAG