CER0036, CER0036 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCER0036
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
Source SequenceMONCS0095
Source TypeEST
PCR ConditionAnnealing temperature: 55
Primer 1CER0036_F: TGGCTTGTAATAGGAAACGTTGTA
Primer 2CER0036_R: TCCACATCTCAAAGGGTATGT
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A07chromosomeA07:92180661..92180785 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:54421478..54421596 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018208.1chromosomeCM018208.1:92179507..92179629 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:49813278..49813414 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:95731438..95731574 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_07chromosomeD10_07:1261876..1262008 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016620.1chromosomeCM016620.1:2713377..2713501 +Gossypium australe (G2) genome CRI_v1.1n/a
A07chromosomeA07:76656404..76656528 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:57548316..57548420 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:96116379..96116501 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A07chromosomeA07:95041740..95041864 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:95111313..95111435 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:91624428..91624550 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold12936supercontigscaffold12936:109924..110046 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D07chromosomeGbar_D07:54811497..54811615 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:91117535..91117657 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:55393952..55394070 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:93436228..93436350 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017616.1chromosomeCM017616.1:95152760..95152878 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017642.1chromosomeCM017642.1:98038432..98038552 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017694.1chromosomeCM017694.1:93464349..93464467 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A07chromosomeA07:97301662..97301786 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:99051483..99051607 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:100370609..100370745 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:1658206..1658331 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:81781096..81781234 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr_01chromosomeChr_01:38932110..38932238 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:54116514..54116673 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:41056753..41056878 -Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:39623638..39623918 -Gossypium lobatum (D7) genome ISU_v1n/a
Chr01chromosomeChr01:39622200..39623261 -Gossypium lobatum (D7) genome ISU_v1n/a
Chr01chromosomeChr01:39623479..39623759 -Gossypium lobatum (D7) genome ISU_v1n/a
E07chromosomeE07:994895..995026 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr05chromosomeChr05:74117821..74117949 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr07chromosomeChr07:155858335..155858461 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0095MONCS0095Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch07_At.07N/A136.2MON_CER0036View
2GX1135 x GX100-2, RIL (2016)AD_ch07_At.07N/A144.9CER0036View
3CCRI-35 x Yumian-1, RIL (2015)AD_ch07_At.07N/A0CER0036View
4CCRI-35 x Yumian-1, RIL (2017)AD_ch07_At.07N/A107.16CER0036View
Sequence
>CER0036 ID=CER0036; Name=CER0036; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
TGGCTTGTAATAGGAAACGTTGTAGTACTATAATATATATATATATATAT
ATATAGCCTTCTACATTATATATATGAGAGTTTTCAATGCTAATTAGCTA
TTGTACATACCCTTTGAGATGTGGA