C2-00048, C2-00048 (genetic_marker) Gossypium hirsutum

Marker Overview
NameC2-00048
AliasC2-048
Genbank IDGQ393056
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 20
Source SequenceMONCS0037
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1C2-00048_F: AATCCACTTTTTACTCAAC
Primer 2C2-00048_R: GGGCTTTATTTAACAGTTT
PolymorphismP_ C2-00048
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393056
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
A02chromosomeA02:46388980..46389298 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018203.1chromosomeCM018203.1:44489111..44489426 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:81763792..81764091 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
At_chr3chromosomeAt_chr3:92161353..92161671 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
A02chromosomeA02:43383568..43383886 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A02chromosomeGhir_A02:47316877..47317197 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A02chromosomeA02:45545041..45545359 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A02chromosomeA02:45893730..45894048 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A02chromosomeA02:45344930..45345248 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
At02chromosomeAt02:46770214..46770529 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold11739supercontigscaffold11739:50584..50899 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_A02chromosomeGbar_A02:44987853..44988168 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A02chromosomeA02:45446381..45446696 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017611.1chromosomeCM017611.1:44762640..44762954 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017637.1chromosomeCM017637.1:47938924..47939244 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017689.1chromosomeCM017689.1:45261602..45261916 -Gossypium darwinii (AD5) genome HGS_v1.1
A02chromosomeA02:46810239..46810557 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr02chromosomeChr02:30209258..30209566 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr01chromosomeChr01:87667252..87667551 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Germplasm
Stock NameType
Deltapine 20accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0037MONCS0037Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2014)AD_ch02_At.02N/A60.5C2-0048View
2TM-1 x 3-79, RIL (2012.v3)AD_ch02_At.02N/A60.52C2-0048View
3LMY22 x LY343, RIL (2016)chr.16N/A37.7C2-00048View
Sequence
>C2-00048 ID=C2-00048; Name=C2-00048; organism=Gossypium hirsutum; type=genetic_marker; length=315bp
AATCCACTTTTTACTCAACTTATTATTATTATTATTACTATTATTATTAT
TATTTTTGCTAGTTGAAATCCTATAAATAGGTTAGTTCACTTTTTATAAC
GAAGAATTTATTGAACTTTAAGATATACACTATACAATAAAAAAATATTA
TTAAGAACAATGTATAACACGTCAAACTGTTCAACTCATATTTTGGAAGT
GCAATATTTGCCCCAACATGTGAACAATTTGATGGATATATATCTCCACA
AATAATATGACCTGAAAGCAAGATTCATTTATGAGCTTGTTAAGGGAAAC
TGTTAAATAAAGCCC